RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CORO6Q6QEF8 472 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 FAM160A2Q8N612 972 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-237ENST00000539504 SLC37A2Q8TED4 501 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 NUDT9Q9BW91 350 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 FAM117AQ9C073 453 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 TLNRD1Q9H1K6 362 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 TCEAL2Q9H3H9 227 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-237ENST00000539504 LRP12Q9Y561 859 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 CHD7Q9P2D1 2997 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 LOC107986453A0A1B0GWG9 222 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 MEGF11A6BM72 1044 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 AGPAT2O15120 278 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 SNAPINO95295 136 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 TXNDC12O95881 172 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ZBTB25P24278 435 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF585AQ6P3V2 769 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 LINC00346Q8IVM7 164 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 FAM219AQ8IW50 185 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 ADAD2Q8NCV1 583 aaKnown RBP10.12□□□□□ -0.79
SYNE1-237ENST00000539504 OR5AP2Q8NGF4 316 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 STOML3Q8TAV4 291 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 NRSN2Q9GZP1 204 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 CYB5R1Q9UHQ9 305 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 PCOLCE2Q9UKZ9 415 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 FAM96BQ9Y3D0 163 aa10.12□□□□□ -0.79
SYNE1-237ENST00000539504 PRSS37A4D1T9 235 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 P2RY10O00398 339 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 ACTL6AO96019 429 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 PMP2P02689 132 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 KCNJ3P48549 501 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 PDZK1IP1Q13113 114 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 SKP2Q13309 424 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 TOMM34Q15785 309 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 MAMDC2Q7Z304 686 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 SLC25A42Q86VD7 318 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 FOXRED2Q8IWF2 684 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 BAP18Q8IXM2 172 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 RNF141Q8WVD5 230 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 HOXB13Q92826 284 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 NXF5Q9H1B4 397 aaKnown RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 SEMA6CQ9H3T2 930 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 PRMT8Q9NR22 394 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 CPED1A4D0V7 1026 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 SOX1O00570 391 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 LMX1BO60663 402 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 MELTFP08582 738 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 CTLA4P16410 223 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 GPM6BQ13491 265 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 ZSCAN1Q8NBB4 408 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 OR4D6Q8NGJ1 314 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF524Q96C55 264 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 COA3Q9Y2R0 106 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 UNC80Q8N2C7 3258 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 TMEM269A0A1B0GVZ9 245 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 LINC01553A4QN01 128 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 KLF8O95600 359 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-237ENST00000539504 GNB3P16520 340 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 ADCYAP1P18509 176 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 NPBWR1P48145 328 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 ZP2Q05996 745 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 SLC9A3R2Q15599 337 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 Q6ZSR6 202 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF321PQ8N8H1 164 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 FAM174AQ8TBP5 190 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 MARCH1Q8TCQ1 289 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 MITD1Q8WV92 249 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 EDARQ9UNE0 448 aa10.11□□□□□ -0.79
SYNE1-237ENST00000539504 A6NCN8 305 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 HSPB2A8KAH6 182 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CELA2BP08218 269 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 SPP1P10451 314 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CTSEP14091 401 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 HNRNPA2B1P22626 353 aaKnown RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 RPL27P61353 136 aaKnown RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 TFF2Q03403 129 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 HSPB2Q16082 182 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 FAM166AQ6J272 317 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 ZNF101Q8IZC7 436 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 FGGYQ96C11 551 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 PIK3IP1Q96FE7 263 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CCNL2Q96S94 520 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 MRPL22Q9NWU5 206 aaKnown RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 GSKIPQ9P0R6 139 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 LHX6Q9UPM6 363 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 B4DGG1 531 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 COL9A1P20849 921 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 NFYBP25208 207 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 IL12BP29460 328 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 B2MP61769 119 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CTAG1AP78358 180 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 HHEXQ03014 270 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 AVPI1Q5T686 147 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 COMMD2Q86X83 199 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 OR1M1Q8NGA1 313 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 ELSPBP1Q96BH3 223 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 ESRP2Q9H6T0 727 aaKnown RBP10.1□□□□□ -0.79
SYNE1-237ENST00000539504 SOHLH2Q9NX45 425 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 PRR13Q9NZ81 148 aa10.1□□□□□ -0.79
SYNE1-237ENST00000539504 GDF2Q9UK05 429 aaPredicted RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms