RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 C1orf21Q9H246 121 aa9.86□□□□□ -0.83
RTN3-209ENST00000538995 SAP30LQ9HAJ7 183 aa9.86□□□□□ -0.83
RTN3-209ENST00000538995 ZNF275Q9NSD4 429 aaPredicted RBP9.86□□□□□ -0.83
RTN3-209ENST00000538995 POLR1DQ9Y2S0 133 aa9.86□□□□□ -0.83
RTN3-209ENST00000538995 CDH10Q9Y6N8 788 aa9.86□□□□□ -0.83
RTN3-209ENST00000538995 IGHV1-69-2A0A0G2JMI3 117 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 TNFRSF11BO00300 401 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 TGFAP01135 160 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 NGFP01138 241 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 T-ENOLP0DO92 83 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 HIST1H1CP16403 213 aaKnown RBP9.85□□□□□ -0.83
RTN3-209ENST00000538995 HOXB6P17509 224 aaKnown RBP9.85□□□□□ -0.83
RTN3-209ENST00000538995 PCMT1P22061 227 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 COL8A2P25067 703 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 THBS2P35442 1172 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 CRYBB2P43320 205 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 HIST1H3AP68431 136 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 CCL8P80075 99 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 TRIP10Q15642 601 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 FAM98BQ52LJ0 330 aaKnown RBP9.85□□□□□ -0.83
RTN3-209ENST00000538995 HIST2H3PS2Q5TEC6 136 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 HIST2H3AQ71DI3 136 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 ZBTB46Q86UZ6 589 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 GJC3Q8NFK1 279 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 OR4C15Q8NGM1 316 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 OR1F12Q8NHA8 337 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 ELMOD3Q96FG2 381 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 SAMD8Q96LT4 415 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 NMNAT3Q96T66 252 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 COQ7Q99807 217 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 BTBD10Q9BSF8 475 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 EGLN1Q9GZT9 426 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 RERGLQ9H628 205 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 DECR2Q9NUI1 292 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 KCNG2Q9UJ96 466 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 ZDHHC8Q9ULC8 765 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 SVEP1Q4LDE5 3571 aa9.85□□□□□ -0.83
RTN3-209ENST00000538995 ZSCAN5BA6NJL1 495 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 B4DSR2 109 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 DCTN6O00399 190 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 PPIHO43447 177 aaKnown RBP9.84□□□□□ -0.83
RTN3-209ENST00000538995 CCNB2O95067 398 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 MPZL1O95297 269 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 IGHV1-46P01743 117 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 CD55P08174 381 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 KITLGP21583 273 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 IL2RGP31785 369 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 COX10Q12887 443 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 SLC36A3Q495N2 470 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 CCDC92Q53HC0 331 aaPredicted RBP9.84□□□□□ -0.83
RTN3-209ENST00000538995 TMEM255AQ5JRV8 349 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 FAM120AOSQ5T036 256 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 ZNF770Q6IQ21 691 aaPredicted RBP9.84□□□□□ -0.83
RTN3-209ENST00000538995 RINLQ6ZS11 566 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 RASSF6Q6ZTQ3 369 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 USP51Q70EK9 711 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 OR6V1Q8N148 313 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 SLC26A10Q8NG04 563 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 OR9Q2Q8NGE9 314 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 OR4K13Q8NH42 304 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 CLDND2Q8NHS1 167 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 GTF3AQ92664 365 aaKnown RBP9.84□□□□□ -0.83
RTN3-209ENST00000538995 TSSK2Q96PF2 358 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 SOX7Q9BT81 388 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 RPRD1BQ9NQG5 326 aaKnown RBP9.84□□□□□ -0.83
RTN3-209ENST00000538995 IL20Q9NYY1 176 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 KLHL21Q9UJP4 597 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 B9D1Q9UPM9 204 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 LHFPL6Q9Y693 200 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 STAB1Q9NY15 2570 aa9.84□□□□□ -0.83
RTN3-209ENST00000538995 YLPM1P49750 1951 aaKnown RBP9.83□□□□□ -0.84
RTN3-209ENST00000538995 CLDN25C9JDP6 229 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 BHLHE40O14503 412 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 RER1O15258 196 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 TPD52L2O43399 206 aaKnown RBP9.83□□□□□ -0.84
RTN3-209ENST00000538995 TIMM8AO60220 97 aaPredicted RBP9.83□□□□□ -0.84
RTN3-209ENST00000538995 RAP2AP10114 183 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 SRD5A1P18405 259 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 CENPAP49450 140 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 DVL1P1P54792 670 aaPredicted RBP9.83□□□□□ -0.84
RTN3-209ENST00000538995 MS4A2Q01362 244 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 SLC3A1Q07837 685 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 TRAP1Q12931 704 aaKnown RBP9.83□□□□□ -0.84
RTN3-209ENST00000538995 ECH1Q13011 328 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 PSG7Q13046 419 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 CCNIQ14094 377 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 HFEQ30201 348 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 OR2T5Q6IEZ7 315 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 SDR9C7Q8NEX9 313 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 OR5L1Q8NGL2 311 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 OR2T29Q8NH02 315 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 CCDC124Q96CT7 223 aaKnown RBP9.83□□□□□ -0.84
RTN3-209ENST00000538995 TIMD4Q96H15 378 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 LRGUKQ96M69 825 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 DGCR6LQ9BY27 220 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 EGLN3Q9H6Z9 239 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 REEP1Q9H902 201 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 FAM53CQ9NYF3 392 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 TAS2R1Q9NYW7 299 aa9.83□□□□□ -0.84
RTN3-209ENST00000538995 PURGQ9UJV8 347 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms