RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PHBP35232 272 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 CHI3L1P36222 383 aaPredicted RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 SRP9P49458 86 aaKnown RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 ERFP50548 548 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 ZNF84P51523 738 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 DLX1P56177 255 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 CD83Q01151 205 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 PGS1Q32NB8 556 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 RNF220Q5VTB9 566 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 OR4F3Q6IEY1 312 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 RNF165Q6ZSG1 346 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 CCDC121Q6ZUS5 278 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 BTN2A1Q7KYR7 527 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 NET1Q7Z628 596 aaPredicted RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 PXKQ7Z7A4 578 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 SERPINA11Q86U17 422 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 COMTD1Q86VU5 262 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 RIMKLAQ8IXN7 391 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 PEX5LQ8IYB4 626 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 Q8N2B8 174 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 NPEPL1Q8NDH3 523 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 OR6X1Q8NH79 312 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 C8orf46Q8TAG6 207 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 RORBQ92753 470 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 ZNF566Q969W8 418 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 MAELQ96JY0 434 aaKnown RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 C4orf45Q96LM5 186 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 PAFAH2Q99487 392 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 ERP44Q9BS26 406 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 C1orf50Q9BV19 199 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 ASPNQ9BXN1 380 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 FAM234AQ9H0X4 552 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 MTHFD2LQ9H903 347 aaPredicted RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 ELOVL3Q9HB03 270 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 TBCCD1Q9NVR7 557 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 ONECUT1Q9UBC0 465 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 ZMAT5Q9UDW3 170 aaKnown RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 MARCOQ9UEW3 520 aaPredicted RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 ZNF443Q9Y2A4 671 aaPredicted RBP5.23□□□□□ -1.57
CD44-237ENST00000534082 KMT2AQ03164 3969 aa5.23□□□□□ -1.57
CD44-237ENST00000534082 RNASET2O00584 256 aaKnown RBP5.22□□□□□ -1.57
CD44-237ENST00000534082 PLPP3O14495 311 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 ADAM20O43506 726 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 ABHD16AO95870 558 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 CHEK2O96017 543 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 BGLAPP02818 100 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 PGA4P0DJD7 388 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 PGA3P0DJD8 388 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 NR2F1P10589 423 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 TCP1P17987 556 aaKnown RBP5.22□□□□□ -1.57
CD44-237ENST00000534082 PMELP40967 661 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 BMXP51813 675 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 HOXA4Q00056 320 aaPredicted RBP5.22□□□□□ -1.57
CD44-237ENST00000534082 HOXC5Q00444 222 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 PSG4Q00888 419 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 MELKQ14680 651 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 KCNJ8Q15842 424 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 LRRC75BQ2VPJ9 315 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 CFAP157Q5JU67 520 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 ARL9Q6T311 187 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 ZDHHC24Q6UX98 284 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 UNQ9370/PRO34162Q6UXP9 181 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 THAP5Q7Z6K1 395 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 ANKRD46Q86W74 232 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 OR5AS1Q8N127 324 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 CLIP4Q8N3C7 705 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 OR51G2Q8NGK0 314 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 OR52P1PQ8NH57 321 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 ISOC1Q96CN7 298 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 CMBLQ96DG6 245 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 SLC25A44Q96H78 314 aaPredicted RBP5.22□□□□□ -1.57
CD44-237ENST00000534082 MOGAT1Q96PD6 335 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 PRR25Q96S07 402 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 KCNN2Q9H2S1 579 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 MUC13Q9H3R2 512 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 C12orf10Q9HB07 376 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 C20orf141Q9NUB4 165 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 MRPL39Q9NYK5 338 aaKnown RBP5.22□□□□□ -1.57
CD44-237ENST00000534082 RPS6KB2Q9UBS0 482 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 PPP2R2CQ9Y2T4 447 aa5.22□□□□□ -1.57
CD44-237ENST00000534082 DYNC1H1Q14204 4646 aaKnown RBP5.22□□□□□ -1.57
CD44-237ENST00000534082 GOLGA6L6A8MZA4 724 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 LRRN3E7EW58 273 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 C11orf98E9PRG8 122 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 F5H5P2 479 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 MLNRO43193 412 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 RAMP3O60896 148 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 FAM20BO75063 409 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 PEX11AO75192 247 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 FCN3O75636 299 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 CPSF4O95639 269 aaKnown RBP5.21□□□□□ -1.58
CD44-237ENST00000534082 ECDO95905 644 aaPredicted RBP5.21□□□□□ -1.58
CD44-237ENST00000534082 THY1P04216 161 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 ADORA3P0DMS8 318 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 MYL2P10916 166 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 CDAP32320 146 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 RGS6P49758 472 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 CLRN1P58418 232 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 NAA20P61599 178 aa5.21□□□□□ -1.58
CD44-237ENST00000534082 ERVK-25P63136 954 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms