RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 CACNA1CQ13936 2221 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 SHANK1Q9Y566 2161 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 A0A1W2PPK0 400 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 FIGNL2A6NMB9 653 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 SLC19A2O60779 497 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 WDR1O75083 606 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 KHDRBS3O75525 346 aaKnown RBP16.31■□□□□ 0.2
SMPD1-208ENST00000533123 EDN3P14138 238 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 GABRA1P14867 456 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 CD40LGP29965 261 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 PPP5CP53041 499 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 EGR3Q06889 387 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 TRAM1Q15629 374 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 NSUN5P2Q63ZY6 315 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 RPRMLQ8N4K4 120 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 C9orf106Q8NAJ2 232 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 PHF3Q92576 2039 aaKnown RBP16.31■□□□□ 0.2
SMPD1-208ENST00000533123 RELNP78509 3460 aa16.31■□□□□ 0.2
SMPD1-208ENST00000533123 ZNF724A8MTY0 619 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 RGS5O15539 181 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 ZFPL1O95159 310 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 TACSTD2P09758 323 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 EIF2B1Q14232 305 aaKnown RBP16.3■□□□□ 0.2
SMPD1-208ENST00000533123 PHYHD1Q5SRE7 291 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 SLC18B1Q6NT16 456 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 KCTD20Q7Z5Y7 419 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 LINC00346Q8IVM7 164 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 MS4A15Q8N5U1 240 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 OR6N1Q8NGY5 312 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 RPS4Y2Q8TD47 263 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 WNT2BQ93097 391 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 RBP7Q96R05 134 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 OR14A2Q96R54 314 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 CRNNQ9UBG3 495 aaPredicted RBP16.3■□□□□ 0.2
SMPD1-208ENST00000533123 RCE1Q9Y256 329 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 FAM215AQ9Y5M1 114 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 IQCMA0A1B0GVH7 501 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 PRRG2O14669 202 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 MRPL33O75394 65 aaKnown RBP16.3■□□□□ 0.2
SMPD1-208ENST00000533123 HIST3H3Q16695 136 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 SEM1Q6ZVN7 128 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 DOLPP1Q86YN1 238 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 LAX1Q8IWV1 398 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 RGP1Q92546 391 aaPredicted RBP16.3■□□□□ 0.2
SMPD1-208ENST00000533123 HTRA1Q92743 480 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 OR8B4Q96RC9 309 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 ABHD6Q9BV23 337 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 ELOVL3Q9HB03 270 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 GLTPQ9NZD2 209 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 FRRS1LQ9P0K9 344 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 TINAGQ9UJW2 476 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 POLEQ07864 2286 aa16.3■□□□□ 0.2
SMPD1-208ENST00000533123 PHYHO14832 338 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 IGHV3-9P01782 118 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 MAGEB1P43366 347 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 CSNK1A1P48729 337 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 TPTEP56180 551 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 SF3B4Q15427 424 aaKnown RBP eCLIP16.29■□□□□ 0.2
SMPD1-208ENST00000533123 THEM4Q5T1C6 240 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 LRFN4Q6PJG9 635 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 NUFIP2Q7Z417 695 aaKnown RBP16.29■□□□□ 0.2
SMPD1-208ENST00000533123 MCHR2Q969V1 340 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 TMEM45BQ96B21 275 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 INTS12Q96CB8 462 aaKnown RBP16.29■□□□□ 0.2
SMPD1-208ENST00000533123 GMPPAQ96IJ6 420 aaPredicted RBP16.29■□□□□ 0.2
SMPD1-208ENST00000533123 MAP6Q96JE9 813 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 TTYH2Q9BSA4 534 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 CFAP46Q8IYW2 2715 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 CENPBD1B2RD01 187 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 QDPRP09417 244 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 ZNF823P16415 610 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 AGTR1P30556 359 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 ZMAT1Q5H9K5 638 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 C1orf185Q5T7R7 199 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 GLB1L2Q8IW92 636 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 C11orf40Q8WZ69 217 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 SP140LQ9H930 580 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 SH3BGRL2Q9UJC5 107 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 FOXD3Q9UJU5 478 aaPredicted RBP16.29■□□□□ 0.2
SMPD1-208ENST00000533123 ZNF835Q9Y2P0 537 aa16.29■□□□□ 0.2
SMPD1-208ENST00000533123 A0A1W2PPL8 197 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 SLC43A1O75387 559 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 TNFSF8P32971 234 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 PTGER4P35408 488 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 MTNR1BP49286 362 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 OR10A3P58181 314 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 ALKBH1Q13686 389 aaKnown RBP16.28■□□□□ 0.2
SMPD1-208ENST00000533123 CORO6Q6QEF8 472 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 C20orf196Q8IYI0 205 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 PARP16Q8N5Y8 322 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 TMEM54Q969K7 222 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 C12orf49Q9H741 205 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 PARPBPQ9NWS1 579 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 POU2F3Q9UKI9 436 aa16.28■□□□□ 0.2
SMPD1-208ENST00000533123 RBMX2Q9Y388 322 aaKnown RBP16.28■□□□□ 0.2
SMPD1-208ENST00000533123 INTS1Q8N201 2190 aaKnown RBP16.28■□□□□ 0.2
SMPD1-208ENST00000533123 UPK1BO75841 260 aa16.27■□□□□ 0.2
SMPD1-208ENST00000533123 TOXO94900 526 aa16.27■□□□□ 0.2
SMPD1-208ENST00000533123 CD1AP06126 327 aa16.27■□□□□ 0.2
SMPD1-208ENST00000533123 CDAP32320 146 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms