RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ZDHHC4Q9NPG8 344 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 SLC7A8Q9UHI5 535 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 TMEM14AQ9Y6G1 99 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 SPATA31E1Q6ZUB1 1445 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 CASKIN1Q8WXD9 1431 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 ERBINQ96RT1 1412 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 CHD8Q9HCK8 2581 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 CDC42BPGQ6DT37 1551 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 TTC28Q96AY4 2481 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 IGSF9BQ9UPX0 1349 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 NRXN1Q9ULB1 1477 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 KIF1AQ12756 1690 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 BAHCC1Q9P281 2608 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 PKD1L3Q7Z443 1732 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 LAMA3Q16787 3333 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 IGHV5-10-1A0A0J9YXX1 117 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 ARHGEF35A5YM69 484 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 FOXE1O00358 373 aaPredicted RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 EEDO75530 441 aaKnown RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 GABARAPO95166 117 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 AIFM1O95831 613 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 HLA-DPB1P04440 258 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 ZNF286BP0CG31 522 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 MUC1P15941 1255 aaPredicted RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 NCF2P19878 526 aaPredicted RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 GPX6P59796 221 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 NUTF2P61970 127 aaKnown RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 ARG2P78540 354 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 MRPS22P82650 360 aaKnown RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 SYCNQ0VAF6 134 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 ZMYND11Q15326 602 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 TGFBIQ15582 683 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 RABL6Q3YEC7 729 aaPredicted RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 LCE1CQ5T751 118 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 LCE1BQ5T7P3 118 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 CST9Q5W186 159 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 TEX43Q6ZNM6 134 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 EID2Q8N6I1 236 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 NOXO1Q8NFA2 376 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 OR13C2Q8NGS9 318 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 RHEBL1Q8TAI7 183 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 ABHD3Q8WU67 409 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 TM4SF18Q96CE8 201 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 LINC00477Q96M19 166 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 NAP1L5Q96NT1 182 aaPredicted RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 SLC25A2Q9BXI2 301 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 HMG20AQ9NP66 347 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 HYPKQ9NX55 129 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 COX16Q9P0S2 106 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 ZNRD1Q9P1U0 126 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 TMCC3Q9ULS5 477 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 PSG8Q9UQ74 426 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 ZNF835Q9Y2P0 537 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 CENPFP49454 3210 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 RGPD8O14715 1765 aaPredicted RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 COL18A1P39060 1754 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 N4BP2Q86UW6 1770 aaPredicted RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 NRXN3Q9Y4C0 1643 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 LAMA2P24043 3122 aaKnown RBP2.12□□□□□ -2.07
CD44-233ENST00000531141 GAKO14976 1311 aa2.12□□□□□ -2.07
CD44-233ENST00000531141 KIAA0100Q14667 2235 aaKnown RBP2.11□□□□□ -2.07
CD44-233ENST00000531141 CABIN1Q9Y6J0 2220 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 TRANK1O15050 2925 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 NUP214P35658 2090 aaPredicted RBP2.11□□□□□ -2.07
CD44-233ENST00000531141 PRUNE2Q8WUY3 3088 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 F6UB75 175 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 CDC7O00311 574 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 FOXH1O75593 365 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 RP2O75695 350 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 SRP72O76094 671 aaKnown RBP2.11□□□□□ -2.07
CD44-233ENST00000531141 SERPIND1P05546 499 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 NPY1RP25929 384 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 CDKN1BP46527 198 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 SSR4P51571 173 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 KRTAP10-1P60331 282 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 YWHAGP61981 247 aaKnown RBP eCLIP2.11□□□□□ -2.07
CD44-233ENST00000531141 ESRRGP62508 458 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 THEM4Q5T1C6 240 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 IGFL1Q6UW32 110 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 UBE2J2Q8N2K1 259 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 ARRDC1Q8N5I2 433 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 MS4A15Q8N5U1 240 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 NECAB1Q8N987 351 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 SPATA4Q8NEY3 305 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 PLPPR1Q8TBJ4 325 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 GPR151Q8TDV0 419 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 CXorf40AQ8TE69 158 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 RTBDNQ9BSG5 229 aaPredicted RBP2.11□□□□□ -2.07
CD44-233ENST00000531141 PRO3102Q9H379 93 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 ZNF355PQ9NSJ1 428 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 KLHL28Q9NXS3 571 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 UVRAGQ9P2Y5 699 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 NUP50Q9UKX7 468 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 ING4Q9UNL4 249 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 CCDC88AQ3V6T2 1871 aa2.11□□□□□ -2.07
CD44-233ENST00000531141 CPDO75976 1380 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 AKAP12Q02952 1782 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 BTAF1O14981 1849 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 TUBGCP6Q96RT7 1819 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 KDM6AO15550 1401 aaPredicted RBP2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms