RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZNF570Q96NI8 536 aa17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 NOP16Q9Y3C1 178 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-210ENST00000506042 SHOX2O60902 331 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 SELEP16581 610 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 TNFRSF1BP20333 461 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 KDELR2P33947 212 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 SELENOWP63302 87 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 ENDOGQ14249 297 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 ZMYND11Q15326 602 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 RABL3Q5HYI8 236 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 DNM1P34Q6PK57 102 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 CALHM3Q86XJ0 350 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 OFCC1Q8IZS5 231 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 OR8B3Q8NGG8 313 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 C10orf82Q8WW14 230 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 ZDHHC16Q969W1 377 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 NEIL1Q96FI4 390 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 OR8B2Q96RD0 313 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 MMP26Q9NRE1 261 aa17.71■□□□□ 0.43
SQSTM1-210ENST00000506042 IGKV1D-43A0A0B4J1Z2 117 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 OR6C6A6NF89 314 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 FAM220BPB1ANY3 271 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 TMEM178BH3BS89 294 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 GZMMP51124 257 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 LSM6P62312 80 aaKnown RBP17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 PRKCDQ05655 676 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 KCNJ8Q15842 424 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 GPR139Q6DWJ6 353 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 C1orf94Q6P1W5 598 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 IGFN1Q86VF2 1251 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 NRMQ8IXM6 262 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 ACOT11Q8WXI4 607 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 HCAR1Q9BXC0 346 aa17.7■□□□□ 0.42
SQSTM1-210ENST00000506042 TRAV27A0A087WT01 109 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 TEX13CA0A0J9YWL9 993 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 ELOVL7A1L3X0 281 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 F5H0A9 414 aaPredicted RBP17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 TRAPPC2LH3BP13 241 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 CD14P08571 375 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 C17orf107Q6ZR85 190 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 C9orf139Q6ZV77 190 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 VASH1Q7L8A9 365 aaPredicted RBP17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 GLB1L2Q8IW92 636 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 CLDN22Q8N7P3 220 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 FAM156AQ8NDB6 213 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 APOBEC3DQ96AK3 386 aaPredicted RBP17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 DUX5Q96PT3 197 aa17.69■□□□□ 0.42
SQSTM1-210ENST00000506042 PRSS37A4D1T9 235 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 CEACAM18A8MTB9 384 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 GSTA4O15217 222 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 PIP5K1CO60331 668 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 EDF1O60869 148 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 KHDRBS3O75525 346 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 FSTL3O95633 263 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 MMP16P51512 607 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 CRYBA2P53672 197 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 PAX8Q06710 450 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 ZBED5Q49AG3 693 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 GPR157Q5UAW9 335 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 LEG1Q6P5S2 330 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 FKBP9P1Q75LS8 142 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 SPATC1Q76KD6 591 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 ADCK1Q86TW2 530 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 MICU2Q8IYU8 434 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 OR8G5Q8NG78 346 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 OR11L1Q8NGX0 322 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 RAB40AQ8WXH6 277 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 ANKRD19PQ9H560 264 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 RERGLQ9H628 205 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 GCM1Q9NP62 436 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 EMC7Q9NPA0 242 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 A4GNTQ9UNA3 340 aa17.68■□□□□ 0.42
SQSTM1-210ENST00000506042 TENM1Q9UKZ4 2725 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 IGHV2-70DA0A0C4DH43 119 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 NDUFAB1O14561 156 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 RAD23AP54725 363 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 ZNF181Q2M3W8 571 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 C16orf87Q6PH81 154 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 GJC3Q8NFK1 279 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 OR4F5Q8NH21 305 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 OR1F12Q8NHA8 337 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 ERGIC1Q969X5 290 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 UPRTQ96BW1 309 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 ZNF583Q96ND8 569 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 SLC30A2Q9BRI3 323 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 HDHD2Q9H0R4 259 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 BEX1Q9HBH7 125 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 ASH2LQ9UBL3 628 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 CLN8Q9UBY8 286 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 STARD10Q9Y365 291 aa17.67■□□□□ 0.42
SQSTM1-210ENST00000506042 FBP2O00757 339 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 KNG1P01042 644 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 WNT2P09544 360 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 CRABP1P29762 137 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 MALLQ13021 153 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 SLC9A3R2Q15599 337 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 IFI44LQ53G44 452 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 CD276Q5ZPR3 534 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 FBXW12Q6X9E4 464 aa17.66■□□□□ 0.42
SQSTM1-210ENST00000506042 MBOAT2Q6ZWT7 520 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms