RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SLC36A1Q7Z2H8 476 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 ZNF546Q86UE3 836 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 GPR148Q8TDV2 347 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 SUSD2Q9UGT4 822 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 NOP16Q9Y3C1 178 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 IGKV1D-43A0A0B4J1Z2 117 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 F12P00748 615 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 PRSS3P35030 304 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 ARRB1P49407 418 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 AFF3P51826 1226 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 NR0B2Q15466 257 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 BAIAP2L2Q6UXY1 529 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 CHST4Q8NCG5 386 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 ZNF519Q8TB69 540 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 DCBLD2Q96PD2 775 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 ZNF471Q9BX82 626 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 SAV1Q9H4B6 383 aaPredicted RBP14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 CPAMD8Q8IZJ3 1885 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 H7C417 338 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 ZNF254O75437 659 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 PNLIPRP2P54317 469 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 DCAF7P61962 342 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 FOXK1P85037 733 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 EIF2B1Q14232 305 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 KRT77Q7Z794 578 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 STEAP2Q8NFT2 490 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 OR10K1Q8NGX5 313 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 OR8B4Q96RC9 309 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 OR6C1Q96RD1 312 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 EMC6Q9BV81 110 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 MFRPQ9BY79 579 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 CHRNA10Q9GZZ6 450 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 MTFP1Q9UDX5 166 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 A8MVM7 634 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 EEF1E1-BLOC1S5C9J1V9 151 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 PLPP3O14495 311 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 ADAM10O14672 748 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 EIF4E2O60573 245 aaKnown RBP14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 RAB40ALP0C0E4 278 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 ZP3P21754 424 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 AVPR2P30518 371 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 SLC17A1Q14916 467 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 GUSBP11Q6P575 273 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 PDZD9Q8IXQ8 264 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 BEST3Q8N1M1 668 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 ZNF441Q8N8Z8 693 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 RAB40AQ8WXH6 277 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 PHYHIPQ92561 330 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 AKIRIN1Q9H9L7 192 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 PLEKHA1Q9HB21 404 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 TAS2R3Q9NYW6 316 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 IGLV1-36A0A0B4J1U3 117 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 NPIPB7O75200 414 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 AHSA1O95433 338 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 RAB3DO95716 219 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 VAMP1P23763 118 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 MAPK3P27361 379 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 APCDD1LQ8NCL9 501 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 PNPLA2Q96AD5 504 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 ABHD6Q9BV23 337 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 CENPMQ9NSP4 180 aa14.79□□□□□ -0.04
CCDC88B-210ENST00000494566 NAP1L6A6NFF2 107 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 TMEM212A6NML5 194 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 TO15178 435 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 XRCC3O43542 346 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 STARP49675 285 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 AKR1D1P51857 326 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 EGR3Q06889 387 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 SHBQ15464 509 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 AKIRIN2Q53H80 203 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 ELFN2Q5R3F8 820 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 OLFML2AQ68BL7 652 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 C3orf33Q6P1S2 294 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 GRINAQ7Z429 371 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 OR52H1Q8NGJ2 320 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 SCARB1Q8WTV0 552 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 TXNIPQ9H3M7 391 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 TMEM231Q9H6L2 316 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 LRP12Q9Y561 859 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 TRBV5-7A0A0A0MS05 114 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 C13orf42A0A1B0GVH6 325 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 A0A1W2PQD3 144 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 RAB11BQ15907 218 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 SPICQ8N5J4 248 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 OR1J4Q8NGS1 313 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 APMAPQ9HDC9 416 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 EMC9Q9Y3B6 208 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 TMEM14AQ9Y6G1 99 aa14.78□□□□□ -0.04
CCDC88B-210ENST00000494566 DXOO77932 396 aaKnown RBP14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 OR2A4O95047 310 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 OR4E1P0C645 316 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 POU3F1Q03052 451 aaPredicted RBP14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 LCN10Q6JVE6 187 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 RNF144BQ7Z419 303 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 GABRG1Q8N1C3 465 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 BVESQ8NE79 360 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 OR2A7Q96R45 310 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 KIF25Q9UIL4 384 aa14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 MRPS18BQ9Y676 258 aaKnown RBP14.77□□□□□ -0.04
CCDC88B-210ENST00000494566 TRAV14DV4A0A0A6YYC5 116 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms