RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PGAP1Q75T13 922 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TAF8Q7Z7C8 310 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 GALNT10Q86SR1 603 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CROCCP2Q86T23 111 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CYP4Z1Q86W10 505 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 THOC6Q86W42 341 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KCNMB4Q86W47 210 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM17Q86X19 198 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MEX3DQ86XN8 651 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PLCZ1Q86YW0 608 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CCDC71Q8IV32 467 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF584Q8IVC4 421 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 GID4Q8IVV7 300 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 DND1Q8IYX4 353 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF444Q8N0Y2 327 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ZFP82Q8N141 532 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 STK40Q8N2I9 435 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PARP8Q8N3A8 854 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 C9orf62Q8N4C0 152 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 C12orf45Q8N5I9 185 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF557Q8N988 423 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 BPIFCQ8NFQ6 507 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 STXBP6Q8NFX7 210 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 OR1M1Q8NGA1 313 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 OR10A7Q8NGE5 316 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 OR5T3Q8NGG3 340 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 OR8J1Q8NGP2 316 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 OR13C5Q8NGS8 318 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 STOML3Q8TAV4 291 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 LKAAEAR1Q8TD35 194 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ACER1Q8TDN7 264 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NEK7Q8TDX7 302 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 C10orf82Q8WW14 230 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CYGBQ8WWM9 190 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PHYHIPQ92561 330 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 DNASE1L2Q92874 299 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NT5C3BQ969T7 300 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ST6GALNAC6Q969X2 333 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 BIRC7Q96CA5 298 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TCEAL4Q96EI5 215 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CPNE2Q96FN4 548 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 HSFY1Q96LI6 401 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PPP3R2Q96LZ3 170 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RNF145Q96MT1 663 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 COL21A1Q96P44 957 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TAAR1Q96RJ0 339 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TNFRSF13CQ96RJ3 184 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MCCC1Q96RQ3 725 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 HBEGFQ99075 208 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 DOK1Q99704 481 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CITED1Q99966 193 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 KCTD14Q9BQ13 255 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ACBD6Q9BR61 282 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 THTPAQ9BU02 230 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PDCD10Q9BUL8 212 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SUCNR1Q9BXA5 334 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 BEX2Q9BXY8 128 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NLNQ9BYT8 704 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PLA2G2FQ9BZM2 168 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 DERL2Q9GZP9 239 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TOLLIPQ9H0E2 274 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 DNTTIP1Q9H147 329 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 POLR3FQ9H1D9 316 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 FBXO44Q9H4M3 255 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ANKRD19PQ9H560 264 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 WDR55Q9H6Y2 383 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 COQ10BQ9H8M1 238 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 WDR41Q9HAD4 459 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 EFCAB1Q9HAE3 211 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ABCB9Q9NP78 766 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RAB9BQ9NP90 201 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PNPLA3Q9NST1 481 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PRR34Q9NV39 138 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MED17Q9NVC6 651 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RAB20Q9NX57 234 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 MS4A12Q9NXJ0 267 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 RDH8Q9NYR8 311 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NKIRAS1Q9NYS0 192 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM9Q9P0T7 183 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 GHRLQ9UBU3 117 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF282Q9UDV7 671 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NUFIP1Q9UHK0 495 aaKnown RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 CD84Q9UIB8 345 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 LEF1Q9UJU2 399 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PILRAQ9UKJ1 303 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 TSPAN16Q9UKR8 245 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SSR3Q9UNL2 185 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PLA2G4CQ9UP65 541 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 POLR3HQ9Y535 204 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 HSPB11Q9Y547 144 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PUS1Q9Y606 427 aaKnown RBP eCLIP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 PCNX3Q9H6A9 2034 aa1.71□□□□□ -2.14
HMGB1-208ENST00000490788 NIPBLQ6KC79 2804 aaeCLIP1.71□□□□□ -2.14
HMGB1-208ENST00000490788 SIPA1L1O43166 1804 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PTPRBP23467 1997 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CENPEQ02224 2701 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CELSR1Q9NYQ6 3014 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CRYBG3Q68DQ2 2970 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TRAV34A0A0B4J273 112 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 IGLON5A6NGN9 336 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms