RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PCP4L1A6NKN8 68 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 OR52A4PA6NMU1 304 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 CXCL11O14625 94 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 RDH16O75452 317 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 ZNF250P15622 560 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 LOXP28300 417 aaPredicted RBP1.86□□□□□ -2.11
PTPN4-212ENST00000488896 IFNA8P32881 189 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 PRPHP41219 470 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 HCAR3P49019 387 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 CEBPDP49716 269 aaPredicted RBP1.86□□□□□ -2.11
PTPN4-212ENST00000488896 LRRC23Q53EV4 343 aaPredicted RBP1.86□□□□□ -2.11
PTPN4-212ENST00000488896 AVPI1Q5T686 147 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 TMEM136Q6ZRR5 245 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 RGS9BPQ6ZS82 235 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 TBC1D21Q8IYX1 336 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 EIF1ADQ8N9N8 165 aaKnown RBP1.86□□□□□ -2.11
PTPN4-212ENST00000488896 SPANXA2-OT1Q8N9U9 137 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 BHLHE23Q8NDY6 225 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 OR1S2Q8NGQ3 325 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 LRRC29Q8WV35 223 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 SEH1LQ96EE3 360 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 WDR34Q96EX3 536 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 DNAJC1Q96KC8 554 aaKnown RBP1.86□□□□□ -2.11
PTPN4-212ENST00000488896 RBBP8Q99708 897 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 C21orf62Q9NYP8 219 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 SLC7A8Q9UHI5 535 aa1.86□□□□□ -2.11
PTPN4-212ENST00000488896 J3QRE1 110 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 TMEM50AO95807 157 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 NDUFB10O96000 172 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 P2RX1P51575 399 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 VSX2P58304 361 aaPredicted RBP1.85□□□□□ -2.11
PTPN4-212ENST00000488896 C6orf226Q5I0X4 101 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 CENPPQ6IPU0 288 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 PIBF1Q8WXW3 757 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 GALNT14Q96FL9 552 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 NT5MQ9NPB1 228 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 EXOSC4Q9NPD3 245 aaKnown RBP1.85□□□□□ -2.11
PTPN4-212ENST00000488896 GOLT1BQ9Y3E0 138 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 NPTNQ9Y639 398 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 MAPK8IP3Q9UPT6 1336 aa1.85□□□□□ -2.11
PTPN4-212ENST00000488896 ARPC4-TTLL3A0A0A6YYG9 625 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 CLRN2A0PK11 232 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 ARHGEF35A5YM69 484 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 CPLX1O14810 134 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 EEDO75530 441 aaKnown RBP1.84□□□□□ -2.11
PTPN4-212ENST00000488896 RAB3AP20336 220 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 TPMTP51580 245 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 KCNJ2P63252 427 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 MRPS22P82650 360 aaKnown RBP1.84□□□□□ -2.11
PTPN4-212ENST00000488896 SLC25A11Q02978 314 aaKnown RBP1.84□□□□□ -2.11
PTPN4-212ENST00000488896 ZNF235Q14590 738 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 TGFBIQ15582 683 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 TCEAL5Q5H9L2 206 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 HCP5Q6MZN7 132 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 GUSBP11Q6P575 273 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 TGIF2LXQ8IUE1 241 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 ZNF502Q8TBZ5 544 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 KLF14Q8TD94 323 aaPredicted RBP1.84□□□□□ -2.11
PTPN4-212ENST00000488896 TCEAL3Q969E4 200 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 PKNOX2Q96KN3 472 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 IP6K3Q96PC2 410 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 ZNF317Q96PQ6 595 aaPredicted RBP1.84□□□□□ -2.11
PTPN4-212ENST00000488896 TM2D3Q9BRN9 247 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 RSG1Q9BU20 258 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 KRTAP4-1Q9BYQ7 146 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 LRRC40Q9H9A6 602 aa1.84□□□□□ -2.11
PTPN4-212ENST00000488896 CDC7O00311 574 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 CNMDO75829 334 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 SLC22A5O76082 557 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 CYB5R3P00387 301 aaPredicted RBP1.83□□□□□ -2.12
PTPN4-212ENST00000488896 CRYGBP07316 175 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 PABPC4LP0CB38 370 aaKnown RBP1.83□□□□□ -2.12
PTPN4-212ENST00000488896 KITLGP21583 273 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 PSMD8P48556 350 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 CTSL3PQ5NE16 218 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 STUMQ69YW2 141 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 ADNP2Q6IQ32 1131 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 SASS6Q6UVJ0 657 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 LINC00336Q6ZUF6 198 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 ADM2Q7Z4H4 148 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 EGFL6Q8IUX8 553 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 OR2L3Q8NG85 312 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 ZBTB18Q99592 522 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 SLC39A3Q9BRY0 314 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 GGTLC1Q9BX51 225 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 HYPKQ9NX55 129 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 SUN2Q9UH99 717 aa1.83□□□□□ -2.12
PTPN4-212ENST00000488896 OTOGLQ3ZCN5 2332 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 IGLV1-36A0A0B4J1U3 117 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 EIF4EP06730 217 aaKnown RBP1.82□□□□□ -2.12
PTPN4-212ENST00000488896 CD37P11049 281 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 HNRNPH3P31942 346 aaKnown RBP1.82□□□□□ -2.12
PTPN4-212ENST00000488896 SSR4P51571 173 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 PPP1CBP62140 327 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 CCNA1P78396 465 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 BST1Q10588 318 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 MAJINQ3KP22 176 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 FAM222AQ5U5X8 452 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 ZNF101Q8IZC7 436 aa1.82□□□□□ -2.12
PTPN4-212ENST00000488896 MS4A15Q8N5U1 240 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms