RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 WDFY2Q96P53 400 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 OR8B4Q96RC9 309 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 C7orf50Q9BRJ6 194 aaKnown RBP11.9□□□□□ -0.5
HMGN1-216ENST00000486741 JAM3Q9BX67 310 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 TMEM59Q9BXS4 323 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 GPR84Q9NQS5 396 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 LAMA2P24043 3122 aaKnown RBP11.9□□□□□ -0.5
HMGN1-216ENST00000486741 F5H5P2 479 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 GABARAPH6UMI1 98 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 APOC1P02654 83 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 RLN2P04090 185 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 CD53P19397 219 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 HERV-K104P61576 105 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 LCN10Q6JVE6 187 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 LRFN5Q96NI6 719 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 NECAB3Q96P71 396 aaPredicted RBP11.9□□□□□ -0.5
HMGN1-216ENST00000486741 OR10A2Q9H208 303 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 SLC6A15Q9H2J7 730 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 TRAPPC4Q9Y296 219 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 WIF1Q9Y5W5 379 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 ICE1Q9Y2F5 2266 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 TNFSF11O14788 317 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 DDOSTP39656 456 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 RAD52P43351 418 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 SORDQ00796 357 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 SLC9A3R2Q15599 337 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 EXT1Q16394 746 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 NUDCD2Q8WVJ2 157 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 ZNF501Q96CX3 271 aaPredicted RBP11.9□□□□□ -0.5
HMGN1-216ENST00000486741 DDOQ99489 341 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 EDARQ9UNE0 448 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 PCDHGA1Q9Y5H4 931 aa11.9□□□□□ -0.5
HMGN1-216ENST00000486741 A0A1W2PR77 199 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 TMEM82A0PJX8 343 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 SLC22A23A1A5C7 686 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 GPR171O14626 319 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 LANCL1O43813 399 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 CELA2AP08217 269 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ICAM2P13598 275 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ENPP1P22413 925 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 BLVRBP30043 206 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 GLP1RP43220 463 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 CX3CR1P49238 355 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 EGR3Q06889 387 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 RBMS2Q15434 407 aaKnown RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 BHLHE23Q8NDY6 225 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 OR6M1Q8NGM8 313 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 FLVCR1-AS1Q8TAF5 88 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 SNX18Q96RF0 628 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 PIGQQ9BRB3 760 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 MESP1Q9BRJ9 268 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 HRASLSQ9HDD0 168 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 HTTP42858 3142 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 IGHV3-64DA0A0J9YX35 117 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 IGHV5-10-1A0A0J9YXX1 117 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ANKUB1A6NFN9 424 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 HSPB6O14558 160 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 RER1O15258 196 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 PLA2G10O15496 165 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 STK17BO94768 372 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 PRH1P02810 166 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 UBCP0CG48 685 aaKnown RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ALOX5APP20292 161 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 IL11P20809 199 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 IL32P24001 234 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 S100GP29377 79 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 DLX5P56178 289 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 IL10RAQ13651 578 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 CDONQ4KMG0 1287 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 B3GNTL1Q67FW5 361 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ZNF813Q6ZN06 617 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 C12orf45Q8N5I9 185 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 UPRTQ96BW1 309 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 RAB3CQ96E17 227 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 SCGB3A2Q96PL1 93 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 UTP23Q9BRU9 249 aaKnown RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 PTDSS2Q9BVG9 487 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 MFFQ9GZY8 342 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ICAM5Q9UMF0 924 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 KLHDC2Q9Y2U9 406 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 SLC33A1O00400 549 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 GDF9O60383 454 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 RAD51DO75771 328 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 CD3DP04234 171 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 MAP2K6P52564 334 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 CEBPEQ15744 281 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 C6orf15Q6UXA7 325 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 FAM71CQ8NEG0 241 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ALKBH3Q96Q83 286 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 LANCL2Q9NS86 450 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 FRRS1LQ9P0K9 344 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 R4GN57 208 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 SNRNP200O75643 2136 aaKnown RBP11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ROS1P08922 2347 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 TRAV1-2A0A0B4J238 106 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 A6NLC8 198 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 PRAF2O60831 178 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 PMP2P02689 132 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 GLI4P10075 376 aa11.89□□□□□ -0.51
HMGN1-216ENST00000486741 ABOP16442 354 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms