RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	MSI2	Q96DH6	328 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	DPH2	Q9BQC3	489 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	C16orf70	Q9BSU1	422 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	FAM49A	Q9H0Q0	323 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SLCO1B3	Q9NPD5	702 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	LIN7C	Q9NUP9	197 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	GALP	Q9UBC7	116 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SAMD4A	Q9UPU9	718 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SIGLEC1	Q9BZZ2	1709 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	CLTCL1	P53675	1640 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TOP2B	Q02880	1626 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	MYOM2	P54296	1465 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426		A0A1W2PRE2	83 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TMEM129	A0AVI4	362 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	PPP5D1	E7EU14	171 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	EI24	O14681	340 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TYMS	P04818	313 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	MPC1L	P0DKB6	136 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	C8orf88	P0DMB2	117 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RAP2A	P10114	183 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	FBL	P22087	321 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RPS3	P23396	243 aa	Known RBP eCLIP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ADORA2A	P29274	412 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	IL2RG	P31785	369 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TNFRSF4	P43489	277 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	DAP3	P51398	398 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RPS15A	P62244	130 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ZNF763	Q0D2J5	394 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	LTC4S	Q16873	150 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RPEL1	Q2QD12	228 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	GLYR1	Q49A26	553 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	MORN2	Q502X0	79 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SPIN4	Q56A73	249 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ACTL10	Q5JWF8	245 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	HECTD2	Q5U5R9	776 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	IER5	Q5VY09	327 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426		Q6ZVL8	140 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TRMT1L	Q7Z2T5	733 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	MRPL41	Q8IXM3	137 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	OR14L1P	Q8NHC6	308 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ATG4A	Q8WYN0	398 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ZNF488	Q96MN9	340 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	MBOAT4	Q96T53	435 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SYT3	Q9BQG1	590 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SULT4A1	Q9BR01	284 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ADAT1	Q9BUB4	502 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RSPO3	Q9BXY4	272 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	PECR	Q9BY49	303 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TMPRSS13	Q9BYE2	586 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SYT4	Q9H2B2	425 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	CD320	Q9NPF0	282 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	COMMD3	Q9UBI1	195 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RNF6	Q9Y252	685 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ADGRL1	O94910	1474 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ABCA9	Q8IUA7	1624 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SPATA31D1	Q6ZQQ2	1576 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426		A0A087WUJ7	227 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TRAV39	A0A0B4J263	110 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	IQCM	A0A1B0GVH7	501 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426		A0A1W2PP18	115 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ANKRD20A5P	A0PJZ0	165 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TRIM49D1	C9J1S8	452 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426		F5H6K3	240 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	PHOX2A	O14813	284 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	YIF1A	O95070	293 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	NKX2-2	O95096	273 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ZNF205	O95201	554 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	CDS2	O95674	445 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	HAND1	O96004	215 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SERPINE1	P05121	402 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ZBTB25	P24278	435 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	F2R	P25116	425 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	FGF9	P31371	208 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RPL21	P46778	160 aa	Known RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	AVPR1B	P47901	424 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	UCP3	P55916	312 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	ST3GAL3	Q11203	375 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	C10orf91	Q5T1B1	145 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SPATA31B1P	Q5VZV4	182 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	CST9	Q5W186	159 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RSPO2	Q6UXX9	243 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	PARG	Q86W56	976 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	FBXO16	Q8IX29	292 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	NOXO1	Q8NFA2	376 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	OR4D11	Q8NGI4	311 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	OR10D4P	Q8NGN7	298 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	GPR148	Q8TDV2	347 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SMIM19	Q96E16	107 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	GALNT14	Q96FL9	552 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SMARCD1	Q96GM5	515 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	FMO2	Q99518	471 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	MARVELD1	Q9BSK0	173 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	DPCD	Q9BVM2	203 aa	Predicted RBP	3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	FUNDC2	Q9BWH2	189 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	LPAR5	Q9H1C0	372 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	RDH14	Q9HBH5	336 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	TXNRD2	Q9NNW7	524 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	FBLN5	Q9UBX5	448 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	SIGLEC9	Q9Y336	463 aa		3.1	□□□□□ -1.91
UBR3-208	ENST00000474426	KIF13B	Q9NQT8	1826 aa		3.1	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms