RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PPP1R3DO95685 299 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 PNPP00491 289 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 SEMG1P04279 462 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 ADH4P08319 380 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 TUBG1P23258 451 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 TNFSF4P23510 183 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 CRABP1P29762 137 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 SLC6A6P31641 620 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 CENPAP49450 140 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 FXYD6P3P58550 94 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 LMO4P61968 165 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 LSM6P62312 80 aaKnown RBP11.85□□□□□ -0.51
USP4-206ENST00000461553 GNGT1P63211 74 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 C16orf89Q6UX73 402 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 PTCHD4Q6ZW05 846 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 PEG10Q86TG7 708 aaKnown RBP11.85□□□□□ -0.51
USP4-206ENST00000461553 TEX29Q8N6K0 151 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 CCL17Q92583 94 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 GAL3ST1Q99999 423 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 C19orf24Q9BVV8 132 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 MSL2Q9HCI7 577 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 TUBG2Q9NRH3 451 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 ATPIF1Q9UII2 106 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 COA3Q9Y2R0 106 aaPredicted RBP11.85□□□□□ -0.51
USP4-206ENST00000461553 DOCK11Q5JSL3 2073 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 J3QW42 95 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 MPZL1O95297 269 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 TXNDC12O95881 172 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 RENP00797 406 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 CD55P08174 381 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 FPR3P25089 353 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 RRM2P31350 389 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 IFNGR2P38484 337 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 RGS6P49758 472 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 TNFAIP6P98066 277 aaPredicted RBP11.84□□□□□ -0.51
USP4-206ENST00000461553 SRSF2Q01130 221 aaKnown RBP11.84□□□□□ -0.51
USP4-206ENST00000461553 OTPQ5XKR4 325 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 ACSM5Q6NUN0 579 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 C1orf94Q6P1W5 598 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 LEG1Q6P5S2 330 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.84□□□□□ -0.51
USP4-206ENST00000461553 OR1F12Q8NHA8 337 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 ERMAPQ96PL5 475 aaPredicted RBP11.84□□□□□ -0.51
USP4-206ENST00000461553 FUZQ9BT04 418 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 NUAK2Q9H093 628 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 OR52D1Q9H346 318 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 METTL17Q9H7H0 456 aaPredicted RBP11.84□□□□□ -0.51
USP4-206ENST00000461553 METRNQ9UJH8 293 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 PURGQ9UJV8 347 aaKnown RBP11.84□□□□□ -0.51
USP4-206ENST00000461553 TMCC3Q9ULS5 477 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 ARL2BPQ9Y2Y0 163 aa11.84□□□□□ -0.51
USP4-206ENST00000461553 A0A0G2JMP0 313 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 A0A0X1KG70 313 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 OR6C6A6NF89 314 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 IMPA2O14732 288 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 UBOX5O94941 541 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 IGHV2-5P01817 119 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 NOS3P29474 1203 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 PSG7Q13046 419 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 ZNF771Q7L3S4 317 aaPredicted RBP11.83□□□□□ -0.52
USP4-206ENST00000461553 DEFB107AQ8IZN7 70 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 OR4M2Q8NGB6 313 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 SLC7A6Q92536 515 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 DCLRE1CQ96SD1 692 aaKnown RBP11.83□□□□□ -0.52
USP4-206ENST00000461553 CDRT15Q96T59 188 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 IFT27Q9BW83 186 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 HDHD2Q9H0R4 259 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 POFUT1Q9H488 388 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 ARL8BQ9NVJ2 186 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 UBAP1Q9NZ09 502 aa11.83□□□□□ -0.52
USP4-206ENST00000461553 RER1O15258 196 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 DEAF1O75398 565 aaPredicted RBP11.82□□□□□ -0.52
USP4-206ENST00000461553 TNFRSF1AP19438 455 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 KITLGP21583 273 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 MSX2P35548 267 aaPredicted RBP11.82□□□□□ -0.52
USP4-206ENST00000461553 CDKN2AP42771 156 aaKnown RBP11.82□□□□□ -0.52
USP4-206ENST00000461553 KCNMB1Q16558 191 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 RFX4Q33E94 735 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 SPATS1Q496A3 300 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 CCDC92Q53HC0 331 aaPredicted RBP11.82□□□□□ -0.52
USP4-206ENST00000461553 FAHD2BQ6P2I3 314 aaPredicted RBP11.82□□□□□ -0.52
USP4-206ENST00000461553 ZDHHC21Q8IVQ6 265 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 GJC3Q8NFK1 279 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 OR2Z1Q8NG97 314 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 OR52L1Q8NGH7 329 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 OR5L1Q8NGL2 311 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 CMBLQ96DG6 245 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 FAHD2AQ96GK7 314 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 TSSK2Q96PF2 358 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 GPA33Q99795 319 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 COQ7Q99807 217 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 OCEL1Q9H607 264 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 RPRD1BQ9NQG5 326 aaKnown RBP11.82□□□□□ -0.52
USP4-206ENST00000461553 CD300AQ9UGN4 299 aa11.82□□□□□ -0.52
USP4-206ENST00000461553 IGLV1-36A0A0B4J1U3 117 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 ARPC3O15145 178 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 SURF4O15260 269 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 GPANK1O95872 356 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 DBHP09172 617 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 GYS2P54840 703 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms