RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PPICP45877 212 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 CAV2P51636 162 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 S100A10P60903 97 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 MGAT2Q10469 447 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 SGCAQ16586 387 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 AWAT1Q58HT5 328 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 TMEM225Q6GV28 225 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 LINC00114Q6XXX2 140 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 SKA3Q8IX90 412 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 FRMD1Q8N878 549 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 OR4D6Q8NGJ1 314 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 AKR7LQ8NHP1 331 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 EDAQ92838 391 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 KIF26BQ2KJY2 2108 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 A0A1B0GTQ1 180 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 A0A1W2PPE2 198 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 TMEM212A6NML5 194 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 EFSO43281 561 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 CSTAP01040 98 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 ACKR3P25106 362 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 RBM34P42696 430 aaKnown RBP10.53□□□□□ -0.72
CPSF3-202ENST00000460593 LILRB2Q8N423 598 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 CCL4L1Q8NHW4 92 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 DCBLD2Q96PD2 775 aa10.53□□□□□ -0.72
CPSF3-202ENST00000460593 FANCMQ8IYD8 2048 aa10.52□□□□□ -0.72
CPSF3-202ENST00000460593 FREM3P0C091 2139 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 A0A087WUJ7 227 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 CXorf51AA0A1B0GTR3 108 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 MBTPS2O43462 519 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 WISP1O95388 367 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 SPARCP09486 303 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 CEBPBP17676 345 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 RAB6AP20340 208 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 NPY4RP50391 375 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 SRSF4Q08170 494 aaKnown RBP10.52□□□□□ -0.73
CPSF3-202ENST00000460593 ERV3-1Q14264 604 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 ELAVL3Q14576 367 aaKnown RBP10.52□□□□□ -0.73
CPSF3-202ENST00000460593 LPCAT3Q6P1A2 487 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 TTLL10Q6ZVT0 673 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 RNF144BQ7Z419 303 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 EXD3Q8N9H8 876 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 RSPRY1Q96DX4 576 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 SLC25A44Q96H78 314 aaPredicted RBP10.52□□□□□ -0.73
CPSF3-202ENST00000460593 TSPAN32Q96QS1 320 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 DHDHQ9UQ10 334 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 NUP210LQ5VU65 1888 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 A0A1B0GV90 55 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 ARPC3O15145 178 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 HTRA3P83110 453 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 GPR18Q14330 331 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF550Q7Z398 422 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 RCBTB1Q8NDN9 531 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 SPACA5Q96QH8 159 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 RNF122Q9H9V4 155 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 GRHPRQ9UBQ7 328 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 CACFD1Q9UGQ2 172 aa10.52□□□□□ -0.73
CPSF3-202ENST00000460593 THSD7BQ9C0I4 1608 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 METTL21EPA6NDL7 271 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 OR10H2O60403 315 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 MPZL1O95297 269 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 GPX4P36969 197 aaPredicted RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 GRK6P43250 576 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 TSFMP43897 325 aaKnown RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 TMEM52BQ4KMG9 183 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 C1QL3Q5VWW1 255 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 LHX8Q68G74 356 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 OR2A2Q6IF42 318 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 PTCRAQ6ISU1 281 aaPredicted RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 CBLN3Q6UW01 205 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 ZNF775Q96BV0 537 aaPredicted RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 KTI12Q96EK9 354 aaPredicted RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 KIRREL1Q96J84 757 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 LPAR4Q99677 370 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 C7orf77A4D0Y5 90 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 HCRTR1O43613 425 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 SELLP14151 372 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 PRF1P14222 555 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 ACTR1AP61163 376 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 RPL18Q07020 188 aaKnown RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 RAB32Q13637 225 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 PDGFRLQ15198 375 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 FAM166AQ6J272 317 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 DRAM2Q6UX65 266 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 GRASPQ7Z6J2 395 aaPredicted RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 SFTPA2Q8IWL1 248 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 DMRTC2Q8IXT2 367 aaPredicted RBP10.51□□□□□ -0.73
CPSF3-202ENST00000460593 WDSUB1Q8N9V3 476 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 ASB13Q8WXK3 278 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 OR10C1Q96KK4 312 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 INTS14Q96SY0 518 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 GGACTQ9BVM4 153 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 NRSN2Q9GZP1 204 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 RAB33BQ9H082 229 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 RRAGCQ9HB90 399 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 TBC1D29Q9UFV1 150 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 NME2P1O60361 137 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 AK1P00568 194 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 MELTFP08582 738 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 AGAP20933 346 aa10.51□□□□□ -0.73
CPSF3-202ENST00000460593 FHITP49789 147 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms