RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ZBED5Q49AG3 693 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 TMEM255AQ5JRV8 349 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 C16orf87Q6PH81 154 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 ZNF730Q6ZMV8 503 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 NLRC3Q7RTR2 1065 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 NRMQ8IXM6 262 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 MICU2Q8IYU8 434 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 C1orf87Q8N0U7 546 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 BCL6BQ8N143 479 aaPredicted RBP11.18□□□□□ -0.62
HMGB3-204ENST00000448905 ITLN1Q8WWA0 313 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 ACOT11Q8WXI4 607 aaPredicted RBP11.18□□□□□ -0.62
HMGB3-204ENST00000448905 RASD2Q96D21 266 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 OR2V2Q96R30 315 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 SSBP3Q9BWW4 388 aaPredicted RBP11.18□□□□□ -0.62
HMGB3-204ENST00000448905 SLITRK2Q9H156 845 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 GCM1Q9NP62 436 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 EMC7Q9NPA0 242 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 A4GNTQ9UNA3 340 aa11.18□□□□□ -0.62
HMGB3-204ENST00000448905 TRAV27A0A087WT01 109 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 LOC100653049A0A140TA62 436 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 A0A1B0GUS0 222 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 PRSS37A4D1T9 235 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 PIP5K1CO60331 668 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 KRT34O76011 436 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 CRYBA1P05813 215 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 CD14P08571 375 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 TROVE2P10155 538 aaKnown RBP eCLIP11.17□□□□□ -0.62
HMGB3-204ENST00000448905 IRF2P14316 349 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 CD80P33681 288 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 YAP1P46937 504 aaKnown RBP11.17□□□□□ -0.62
HMGB3-204ENST00000448905 BPIFB3P59826 476 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 LSM6P62312 80 aaKnown RBP11.17□□□□□ -0.62
HMGB3-204ENST00000448905 TUSC1Q2TAM9 212 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 SPRNQ5BIV9 151 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 KLF17Q5JT82 389 aaPredicted RBP11.17□□□□□ -0.62
HMGB3-204ENST00000448905 TREML4Q6UXN2 200 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 Q6ZR03 302 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 FKBP9P1Q75LS8 142 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 VASH1Q7L8A9 365 aaPredicted RBP11.17□□□□□ -0.62
HMGB3-204ENST00000448905 CYP4Z1Q86W10 505 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 GLB1L2Q8IW92 636 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 LRRC75AQ8NAA5 344 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 OR8G5Q8NG78 346 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 OR1F12Q8NHA8 337 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 RAB40AQ8WXH6 277 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 ZDHHC16Q969W1 377 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 RERGLQ9H628 205 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 TMEM165Q9HC07 324 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 DCAF16Q9NXF7 216 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 RHCGQ9UBD6 479 aa11.17□□□□□ -0.62
HMGB3-204ENST00000448905 KIR2DS1A0A191URI9 304 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 OR6C6A6NF89 314 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 CEACAM18A8MTB9 384 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 FAM220BPB1ANY3 271 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 F5H0A9 414 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-204ENST00000448905 SLC16A7O60669 478 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 KHDRBS3O75525 346 aaKnown RBP11.16□□□□□ -0.62
HMGB3-204ENST00000448905 FSTL3O95633 263 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 SCG5P05408 212 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 RPS2P15880 293 aaKnown RBP11.16□□□□□ -0.62
HMGB3-204ENST00000448905 SELEP16581 610 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 SLC9A3R2Q15599 337 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 TTMPQ5BVD1 217 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 ZNF362Q5T0B9 420 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-204ENST00000448905 GPR139Q6DWJ6 353 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 C9orf139Q6ZV77 190 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 TMPRSS11FQ6ZWK6 438 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 MBOAT2Q6ZWT7 520 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 OFCC1Q8IZS5 231 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 PARP8Q8N3A8 854 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 GJC3Q8NFK1 279 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 NEIL1Q96FI4 390 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-204ENST00000448905 ZNF570Q96NI8 536 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 HCAR1Q9BXC0 346 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 C1QTNF5Q9BXJ0 243 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 TMEM120AQ9BXJ8 343 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 NMNAT1Q9HAN9 279 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-204ENST00000448905 TMEM100Q9NV29 134 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 KIF17Q9P2E2 1029 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 ASH2LQ9UBL3 628 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 TMEM5Q9Y2B1 443 aa11.16□□□□□ -0.62
HMGB3-204ENST00000448905 TEX13CA0A0J9YWL9 993 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 H7C1C5 153 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 GSTA4O15217 222 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 ZNF682O95780 498 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 GPANK1O95872 356 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 SEC61A1P61619 476 aaKnown RBP11.15□□□□□ -0.62
HMGB3-204ENST00000448905 LCN6P62502 163 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 KLF10Q13118 480 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 LEG1Q6P5S2 330 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 PGM2L1Q6PCE3 622 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 FBXW12Q6X9E4 464 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 HDXQ7Z353 690 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 KLBQ86Z14 1044 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 OR5AS1Q8N127 324 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 FAM156AQ8NDB6 213 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 OR8B3Q8NGG8 313 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 OR13C2Q8NGS9 318 aa11.15□□□□□ -0.62
HMGB3-204ENST00000448905 APOBEC3DQ96AK3 386 aaPredicted RBP11.15□□□□□ -0.62
HMGB3-204ENST00000448905 TMIGD2Q96BF3 282 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms