RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 SIRPAP78324 504 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 AESQ08117 197 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 TCTN1Q2MV58 587 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 ZNF385BQ569K4 471 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 RXFP4Q8TDU9 374 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 SMOC2Q9H3U7 446 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 IFITM10A6NMD0 228 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 NRASP01111 189 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 HRASP01112 189 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 KRASP01116 189 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 SEMA3BQ13214 749 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 HNRNPA1L2Q32P51 320 aaKnown RBP8.24□□□□□ -1.09
NIPBL-202ENST00000448238 C22orf39Q6P5X5 142 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 WDR31Q8NA23 367 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 OR6S1Q8NH40 331 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 DNAJC19Q96DA6 116 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 ADTRPQ96IZ2 230 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 UFC1Q9Y3C8 167 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 JCADQ9P266 1359 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 DHRS7CA6NNS2 312 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 PRAMEF26H0Y7S4 382 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 DNASE2O00115 360 aaPredicted RBP8.24□□□□□ -1.09
NIPBL-202ENST00000448238 TGFB1I1O43294 461 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 RECKO95980 971 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 LRRC18Q8N456 261 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 NECTIN4Q96NY8 510 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 ZNF300Q96RE9 604 aaPredicted RBP8.24□□□□□ -1.09
NIPBL-202ENST00000448238 P2RY12Q9H244 342 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 CLMPQ9H6B4 373 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 MED13LQ71F56 2210 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 CLEC18AA5D8T8 446 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 FAM171A2A8MVW0 826 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 LIMS3P0CW19 117 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 LIMS4P0CW20 117 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 TMEM241Q24JQ0 296 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 CLEC18CQ8NCF0 446 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 OR5M1Q8NGP8 315 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 HDAC8Q9BY41 377 aa8.24□□□□□ -1.09
NIPBL-202ENST00000448238 CER1O95813 267 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 S1PR4O95977 384 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 CSF2RAP15509 400 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 ELAVL4P26378 380 aaKnown RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 RPS24P62847 133 aaKnown RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 KCNJ10P78508 379 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 GALNT2Q10471 571 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 OR2G2Q8NGZ5 317 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 WBP2Q969T9 261 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 FAM3DQ96BQ1 224 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 ZNF764Q96H86 408 aaPredicted RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 DCAF13Q9NV06 445 aaKnown RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 SLC45A2Q9UMX9 530 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 CDC14CA4D256 554 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 SCG5P05408 212 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 SLC35E2P0CK97 266 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 ERVS71-1P61550 626 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 TRA2BP62995 288 aaKnown RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 PRAMEF19Q5SWL8 479 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 PTPRQQ9UMZ3 2332 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 PIKFYVEQ9Y2I7 2098 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 TFAP2AP05549 437 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 FPR3P25089 353 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 RGRP47804 291 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 FHITP49789 147 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 NPY4RP50391 375 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 GNB2P62879 340 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 C5orf17Q8NAS9 161 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 OR9Q2Q8NGE9 314 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 MMP26Q9NRE1 261 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 VDAC3Q9Y277 283 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 CORINQ9Y5Q5 1042 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 GLTPD2A6NH11 291 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 RPS26P62854 115 aaKnown RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 POU3F1Q03052 451 aaPredicted RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 SLC16A12Q6ZSM3 486 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 USP50Q70EL3 339 aaPredicted RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 DTWD1Q8N5C7 304 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 OR5AU1Q8NGC0 362 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 PERPQ96FX8 193 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 GABARAPL3Q9BY60 117 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 NUMBLQ9Y6R0 609 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 NAT1P18440 290 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 GDF1P27539 372 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 SIAH3Q8IW03 269 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 ADAT3Q96EY9 351 aaPredicted RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 SLC35A4Q96G79 324 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 TMEM231Q9H6L2 316 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 GORASP2Q9H8Y8 452 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 BTNL2Q9UIR0 455 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 YLPM1P49750 1951 aaKnown RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 TISP43B9A030 160 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 POU3F3P20264 500 aaPredicted RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 MEOX2P50222 304 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 RPS16P62249 146 aaKnown RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 SHC2P98077 582 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 CLPPQ16740 277 aaPredicted RBP8.23□□□□□ -1.09
NIPBL-202ENST00000448238 DUSP28Q4G0W2 176 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 AFMIDQ63HM1 303 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 TMEM139Q8IV31 216 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 BAP18Q8IXM2 172 aa8.23□□□□□ -1.09
NIPBL-202ENST00000448238 C11orf40Q8WZ69 217 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms