RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 ZDHHC22Q8N966 263 aa17.11■□□□□ 0.33
SDCBP-204ENST00000447182 GAL3ST1Q99999 423 aa17.11■□□□□ 0.33
SDCBP-204ENST00000447182 PDCD10Q9BUL8 212 aa17.11■□□□□ 0.33
SDCBP-204ENST00000447182 LRRC61Q9BV99 259 aa17.11■□□□□ 0.33
SDCBP-204ENST00000447182 FARSAQ9Y285 508 aaKnown RBP17.11■□□□□ 0.33
SDCBP-204ENST00000447182 TMED7-TICAM2A0A0A6YYA0 188 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 LOC107986453A0A1B0GWG9 222 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 TMEM235A6NFC5 223 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 A8MVM7 634 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 WISP1O95388 367 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 NUDT14O95848 222 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 NAT1P18440 290 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 FASLGP48023 281 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 SPOCK1Q08629 439 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 ZNF169Q14929 603 aaPredicted RBP17.1■□□□□ 0.33
SDCBP-204ENST00000447182 KIAA0895LQ68EN5 471 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 CORO6Q6QEF8 472 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 ZNF704Q6ZNC4 412 aaPredicted RBP17.1■□□□□ 0.33
SDCBP-204ENST00000447182 C17orf107Q6ZR85 190 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 PPP1R1CQ8WVI7 109 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 LRRC46Q96FV0 321 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 SLC6A15Q9H2J7 730 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 ZMAT3Q9HA38 289 aaKnown RBP17.1■□□□□ 0.33
SDCBP-204ENST00000447182 GDF2Q9UK05 429 aaPredicted RBP17.1■□□□□ 0.33
SDCBP-204ENST00000447182 TMED7Q9Y3B3 224 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 EMC9Q9Y3B6 208 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 FREM3P0C091 2139 aa17.1■□□□□ 0.33
SDCBP-204ENST00000447182 METTL21EPA6NDL7 271 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 C17orf51A8MQB3 221 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 ABCD4O14678 606 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 TO15178 435 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 TAF13Q15543 124 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 ZNF260Q3ZCT1 412 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 PAN3Q58A45 887 aaKnown RBP17.09■□□□□ 0.33
SDCBP-204ENST00000447182 RNASE10Q5GAN6 216 aaKnown RBP17.09■□□□□ 0.33
SDCBP-204ENST00000447182 C1orf140Q5VVS0 124 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 FAHD2BQ6P2I3 314 aaPredicted RBP17.09■□□□□ 0.33
SDCBP-204ENST00000447182 MITD1Q8WV92 249 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 FAHD2AQ96GK7 314 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 GAL3ST4Q96RP7 486 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 UCK1Q9HA47 277 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 OR52A1Q9UKL2 312 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 RAB22AQ9UL26 194 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 COL5A1P20908 1838 aaPredicted RBP17.09■□□□□ 0.33
SDCBP-204ENST00000447182 CPED1A4D0V7 1026 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 EBPQ15125 230 aaKnown RBP17.09■□□□□ 0.33
SDCBP-204ENST00000447182 PCK2Q16822 640 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 OR10K2Q6IF99 312 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 UQCC3Q6UW78 93 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 OR2W3Q7Z3T1 314 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 CLRN3Q8NCR9 226 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 OR4D6Q8NGJ1 314 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 TSLPQ969D9 159 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 TBL1XR1Q9BZK7 514 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 CHRNA10Q9GZZ6 450 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 WBP1LQ9NX94 342 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 COA3Q9Y2R0 106 aaPredicted RBP17.09■□□□□ 0.33
SDCBP-204ENST00000447182 PIAS3Q9Y6X2 628 aa17.09■□□□□ 0.33
SDCBP-204ENST00000447182 RAB27BO00194 218 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 NDUFA2O43678 99 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 DLSTP36957 453 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 CXADRP78310 365 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 ELAVL1Q15717 326 aaKnown RBP17.08■□□□□ 0.33
SDCBP-204ENST00000447182 HYAL4Q2M3T9 481 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 TMEM244Q5VVB8 128 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 ELP2Q6IA86 826 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 C3orf33Q6P1S2 294 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 CCDC36Q8IYA8 594 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 BPIFCQ8NFQ6 507 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 OR4S1Q8NGB4 309 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 OR5T2Q8NGG2 359 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 MRGPRFQ96AM1 343 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 ZNF75AQ96N20 296 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 TMEM106CQ9BVX2 250 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 ZNF416Q9BWM5 594 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 ZNF471Q9BX82 626 aaPredicted RBP17.08■□□□□ 0.33
SDCBP-204ENST00000447182 PIGMQ9H3S5 423 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 SOHLH2Q9NX45 425 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 THADAQ6YHU6 1953 aa17.08■□□□□ 0.33
SDCBP-204ENST00000447182 KNL1Q8NG31 2342 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 C9orf170A2RU37 121 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 WIPF3A6NGB9 483 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 LILRA5A6NI73 299 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 RAB3AP20336 220 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 ATP1B3P54709 279 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 SLC26A5P58743 744 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 PPIAP62937 165 aaKnown RBP17.08■□□□□ 0.32
SDCBP-204ENST00000447182 MC2RQ01718 297 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 HYAL1Q12794 435 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 PPP1R1AQ13522 171 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 SNTB1Q13884 538 aaKnown RBP17.08■□□□□ 0.32
SDCBP-204ENST00000447182 DEGS2Q6QHC5 323 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 C5orf46Q6UWT4 87 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 GRINAQ7Z429 371 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 FJX1Q86VR8 437 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 C9orf40Q8IXQ3 194 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 SLC26A10Q8NG04 563 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 PHB2Q99623 299 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 NRSN2Q9GZP1 204 aa17.08■□□□□ 0.32
SDCBP-204ENST00000447182 CST11Q9H112 138 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms