RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TSPAN14Q8NG11 270 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 OR10H4Q8NGA5 316 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 OR52I1Q8NGK6 324 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 GGHQ92820 318 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 S100PBPQ96BU1 408 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 MRPL48Q96GC5 212 aaKnown RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 FOXN4Q96NZ1 517 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 TEAD3Q99594 435 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 MRPS26Q9BYN8 205 aaKnown RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 FKBP14Q9NWM8 211 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 PAK1IP1Q9NWT1 392 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 CHCHD3Q9NX63 227 aaKnown RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 HAO2Q9NYQ3 351 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 SCOCQ9UIL1 159 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 COA3Q9Y2R0 106 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 EXOSC1Q9Y3B2 195 aaKnown RBP10.6□□□□□ -0.71
PTPRF-208ENST00000437607 PCDHGB1Q9Y5G3 927 aa10.6□□□□□ -0.71
PTPRF-208ENST00000437607 IGKV1D-43A0A0B4J1Z2 117 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 TVP23AA6NH52 213 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF670-ZNF695F2Z2N8 137 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 SELENOFO60613 162 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 UPK3AO75631 287 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 IGHV3-9P01782 118 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 MT-ND2P03891 347 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 SBK2P0C263 348 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 GAAP10253 952 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ATP6V1B1P15313 513 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF823P16415 610 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 DCKP27707 260 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 LAP3P28838 519 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 CDKN1AP38936 164 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ENTPD1P49961 510 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF133P52736 654 aaPredicted RBP10.59□□□□□ -0.71
PTPRF-208ENST00000437607 CDH15P55291 814 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 NCMAPQ5T1S8 102 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 TSPO2Q5TGU0 170 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 LYPD4Q6UWN0 246 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 TFAP2EQ6VUC0 442 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 DNM1P46Q6ZS02 220 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 SLC16A9Q7RTY1 509 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 PRSS48Q7RTY5 328 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 SLC35F2Q8IXU6 374 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ZNF511Q8NB15 262 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 SLC26A10Q8NG04 563 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 OR4F15Q8NGB8 312 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 TMEM80Q96HE8 168 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 DUSP21Q9H596 190 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 SEC61A2Q9H9S3 476 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ADGRL4Q9HBW9 690 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 CRLF2Q9HC73 371 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 INPP5EQ9NRR6 644 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 SLC7A10Q9NS82 523 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 MRPS18AQ9NVS2 196 aaKnown RBP10.59□□□□□ -0.71
PTPRF-208ENST00000437607 ERVK-18Q9QC07 812 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 MALT1Q9UDY8 824 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 KCNG2Q9UJ96 466 aa10.59□□□□□ -0.71
PTPRF-208ENST00000437607 DIMT1Q9UNQ2 313 aaKnown RBP10.59□□□□□ -0.71
PTPRF-208ENST00000437607 NBEAL1Q6ZS30 2694 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 C12orf71A8MTZ7 269 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 PHYHO14832 338 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 NDUFS7O75251 213 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 GPANK1O95872 356 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 SPARCP09486 303 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 SMIM18P0DKX4 95 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 MSR1P21757 451 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 SH3BGRP55822 239 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-208ENST00000437607 HSF2Q03933 536 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 TAB1Q15750 504 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 TBCEQ15813 527 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-208ENST00000437607 STK11Q15831 433 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 ETFDHQ16134 617 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 CEACAM16Q2WEN9 425 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 PHYHD1Q5SRE7 291 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 SFRP5Q5T4F7 317 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 ALKBH2Q6NS38 261 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 LRFN4Q6PJG9 635 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 TIGD4Q8IY51 512 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 ACBD7Q8N6N7 88 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 ZNRF4Q8WWF5 429 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 SGCDQ92629 289 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 FBXW5Q969U6 566 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 MYCBPQ99417 103 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-208ENST00000437607 MNTQ99583 582 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 TBX5Q99593 518 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 FOXB1Q99853 325 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 REG4Q9BYZ8 158 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 YIPF3Q9GZM5 350 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 NELFAQ9H3P2 528 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 WDR76Q9H967 626 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 GPR35Q9HC97 309 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 FGF20Q9NP95 211 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-208ENST00000437607 POLE4Q9NR33 117 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 LAMP5Q9UJQ1 280 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 EXOGQ9Y2C4 368 aaKnown RBP10.58□□□□□ -0.72
PTPRF-208ENST00000437607 RNF115Q9Y4L5 304 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 TMEM14AQ9Y6G1 99 aa10.58□□□□□ -0.72
PTPRF-208ENST00000437607 DAPL1A0PJW8 107 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 ZNF99A8MXY4 864 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-208ENST00000437607 SEC14L2O76054 403 aa10.57□□□□□ -0.72
PTPRF-208ENST00000437607 FARS2O95363 451 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms