RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SLC47A1Q96FL8 570 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GRAMD2BQ96HH9 432 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NSL1Q96IY1 281 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 OR5B2Q96R09 309 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 MCHR1Q99705 422 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ARHGDIGQ99819 225 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SLC39A3Q9BRY0 314 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NAA11Q9BSU3 229 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 TAPBPLQ9BX59 468 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 RSPO3Q9BXY4 272 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 POLR2J2Q9GZM3 115 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 POLR2J3Q9H1A7 115 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 HRH4Q9H3N8 390 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM185BQ9H7F4 350 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 CMTM6Q9NX76 183 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF224Q9NZL3 707 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM181Q9P2C4 612 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SLC9A8Q9Y2E8 581 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 EXPH5Q8NEV8 1989 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NBEAQ8NFP9 2946 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 HIVEP3Q5T1R4 2406 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 LOC100509620A0A075B734 347 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 IGKV3D-15A0A087WSY6 115 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 A0A087WUJ7 227 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 A0A1B0GWA3 101 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NKX2-6A6NCS4 301 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 CCT8L1PA6NM43 557 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF724A8MTY0 619 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 A8MXE2 369 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GPR171O14626 319 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SMAD9O15198 467 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ADAM20O43506 726 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 OR2T1O43869 369 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 CYTIPO60759 359 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NPIPB7O75200 414 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GMNNO75496 209 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 VAMP5O95183 116 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 AHSA1O95433 338 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 CGAP01215 116 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GPIP06744 558 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 YES1P07947 543 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SNRNP70P08621 437 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 HSD17B1P14061 328 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ANXA7P20073 488 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 CCNA2P20248 432 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 AQP1P29972 269 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 CD79BP40259 229 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GSK3BP49841 420 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NUDT2P50583 147 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SLC7A2P52569 658 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 OR2B6P58173 313 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NCALDP61601 193 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SELENOWP63302 87 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 H3F3AP84243 136 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 RELQ04864 619 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 TFF3Q07654 80 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 OR1Q1Q15612 314 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF239Q16600 458 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 NRF1Q16656 503 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GLIPR1L2Q4G1C9 344 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 C1orf140Q5VVS0 124 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF613Q6PF04 617 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 MEX3BQ6ZN04 569 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF771Q7L3S4 317 aaPredicted RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 LINC00346Q8IVM7 164 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GCNT2Q8N0V5 402 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 PGAM4Q8N0Y7 254 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 CNEP1R1Q8N9A8 125 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 GPR32P1Q8NGA4 272 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 OR6K3Q8NGY3 331 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 MFSD8Q8NHS3 518 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 PIGXQ8TBF5 258 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 RNF128Q8TEB7 428 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 FAM222BQ8WU58 562 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ROBO4Q8WZ75 1007 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 LZICQ8WZA0 190 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SLC38A4Q969I6 547 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 TAMM41Q96BW9 452 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ARL5BQ96KC2 179 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 EPYCQ99645 322 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 RBM24Q9BX46 236 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 SRXN1Q9BYN0 137 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 OR11A1Q9GZK7 315 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ADPRHL2Q9NX46 363 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 KLHL9Q9P2J3 617 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 ABCD2Q9UBJ2 740 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 OR14J1Q9UGF5 321 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 KCNN3Q9UGI6 736 aa2.17□□□□□ -2.06
VPS13A-208ENST00000423463 HELZ2Q9BYK8 2649 aaKnown RBP2.17□□□□□ -2.06
VPS13A-208ENST00000423463 TRAV36DV7A0A075B6V5 113 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 A0A0B4J2E0 115 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 LOC102725191A0A1B0GVB3 256 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 A0A1B0GX12 115 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TRAPPC13A5PLN9 417 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 HTR3EA5X5Y0 456 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 EEF1E1-BLOC1S5C9J1V9 151 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF587BE7ETH6 402 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 C16orf97H3BN30 126 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 C19orf84I3L1E1 186 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CXCR6O00574 342 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms