RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CCKBRP32239 447 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CBX5P45973 191 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC37A1P57057 533 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 EIF5AP63241 154 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TDGQ13569 410 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CD226Q15762 336 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 MEP1BQ16820 701 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PEG10Q86TG7 708 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 INO80EQ8NBZ0 244 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 LYPD6BQ8NI32 183 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ELP5Q8TE02 316 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PPP1R1CQ8WVI7 109 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 HMGB4Q8WW32 186 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TAAR8Q969N4 342 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ADIPOR1Q96A54 375 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 NARS2Q96I59 477 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 SMIM8Q96KF7 97 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 SCGB3A2Q96PL1 93 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC6A7Q99884 636 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 RAB33BQ9H082 229 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 MOB1AQ9H8S9 216 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 HRASLS2Q9NWW9 162 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 KLHL13Q9P2N7 655 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 KCNG2Q9UJ96 466 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 MKL2Q9ULH7 1088 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 OR10H1Q9Y4A9 318 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 MRPS18BQ9Y676 258 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 IGKV3D-11A0A0A0MRZ8 115 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF98A6NK75 572 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM74A7A6NL05 159 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TSPAN2O60636 221 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PNPP00491 289 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 HLA-AP01891 365 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PSMB6P28072 239 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 AKT2P31751 481 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 DLSTP36957 453 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PBX2P40425 430 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PRKXP51817 358 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 NR0B1P51843 470 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 LUMP51884 338 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 INSM1Q01101 510 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 GLO1Q04760 184 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 IL15RAQ13261 267 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 SURF2Q15527 256 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF528Q3MIS6 628 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM74A3Q4VXF1 159 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 RNASE10Q5GAN6 216 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM240Q5SV17 173 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 DNM1P34Q6PK57 102 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PARGQ86W56 976 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 LURAP1LQ8IV03 231 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 YAF2Q8IY57 180 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 OR1M1Q8NGA1 313 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 OR9A4Q8NGU2 314 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ST7LQ8TDW4 575 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 KTI12Q96EK9 354 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 MVB12AQ96EY5 273 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TSSK2Q96PF2 358 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 AMELYQ99218 206 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TINAGL1Q9GZM7 467 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 SYT4Q9H2B2 425 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 IFT22Q9H7X7 185 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 BIN3Q9NQY0 253 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CYTL1Q9NRR1 136 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 COA4Q9NYJ1 87 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF629Q9UEG4 869 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ATPIF1Q9UII2 106 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PCDHB10Q9UN67 800 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 LRP12Q9Y561 859 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CENPFP49454 3210 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 OR6C76A6NM76 312 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM14DPA8MWL7 114 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 HRKO00198 91 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PSMD9O00233 223 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ETV2O00321 342 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 OR2T1O43869 369 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 UTS2O95399 124 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ERCC1P07992 297 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM157CP0CG43 387 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PGCP20142 388 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 GRPRP30550 384 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ECI1P42126 302 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 ALDH3B1P43353 468 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CSNK1EP49674 416 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 RAB13P51153 203 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CCR5P51681 352 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 POLR2HP52434 150 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PNLIPRP2P54317 469 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 SUMO3P55854 103 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 MRPS21P82921 87 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 HMGN3Q15651 99 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM128Q5BJH2 165 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 GLYATL3Q5SZD4 288 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 C17orf107Q6ZR85 190 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 MISPQ8IVT2 679 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 BAP18Q8IXM2 172 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEFF1Q8IYR6 380 aa5.14□□□□□ -1.59
CCDC88A-203ENST00000412148 PUSL1Q8N0Z8 303 aaKnown RBP5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms