RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ARPC4-TTLL3A0A0A6YYG9 625 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 ZNF503-AS2A6NEH8 195 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 J3QLW9 94 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 MAGEB4O15481 346 aaPredicted RBP15.77■□□□□ 0.11
SDC1-203ENST00000403076 DOK2O60496 412 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 AGFG2O95081 481 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 KRT8P05787 483 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 MMP7P09237 267 aaPredicted RBP15.77■□□□□ 0.11
SDC1-203ENST00000403076 ATP6V1B1P15313 513 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 ZNF19P17023 458 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 HIST1H3AP68431 136 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 RAB35Q15286 201 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 TP53I3Q53FA7 332 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 CCDC92Q53HC0 331 aaPredicted RBP15.77■□□□□ 0.11
SDC1-203ENST00000403076 ELFN2Q5R3F8 820 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 TIMM23BQ5SRD1 257 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 HIST2H3PS2Q5TEC6 136 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 HIST2H3AQ71DI3 136 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 FAM220AQ7Z4H9 259 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 SPARTQ8N0X7 666 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 YIPF7Q8N8F6 280 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 MND1Q9BWT6 205 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 C1QTNF6Q9BXI9 259 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 MROQ9BYG7 248 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 WNT5BQ9H1J7 359 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 B3GNT2Q9NY97 397 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 SLCO1C1Q9NYB5 712 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 GNG8Q9UK08 70 aa15.77■□□□□ 0.11
SDC1-203ENST00000403076 CAB39Q9Y376 341 aaPredicted RBP15.77■□□□□ 0.11
SDC1-203ENST00000403076 IQCMA0A1B0GVH7 501 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 METTL15A6NJ78 407 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 ZNF878C9JN71 531 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 TACSTD2P09758 323 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 OR12D2P58182 307 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 EGR3Q06889 387 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 PPA1Q15181 289 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 OR2G6Q5TZ20 316 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 RNLSQ5VYX0 342 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 KCTD20Q7Z5Y7 419 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 ZNF679Q8IYX0 411 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 NANOGP1Q8N7R0 232 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 OR10S1Q8NGN2 331 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 OR1F12Q8NHA8 337 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 RNF133Q8WVZ7 376 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 HSD17B8Q92506 261 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 C4orf36Q96KX1 117 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 OR8B4Q96RC9 309 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 HDHD2Q9H0R4 259 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 ELOVL3Q9HB03 270 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 NOX3Q9HBY0 568 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 VCX3AQ9NNX9 186 aa15.76■□□□□ 0.11
SDC1-203ENST00000403076 TMEM129A0AVI4 362 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 PRR32B1ATL7 298 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 HSD11B1P28845 292 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 HTR5AP47898 357 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 RIDAP52758 137 aaKnown RBP15.75■□□□□ 0.11
SDC1-203ENST00000403076 GALK2Q01415 458 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 ECH1Q13011 328 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 IRF3Q14653 427 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 RAB39AQ14964 217 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 TAB1Q15750 504 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 CDONQ4KMG0 1287 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 VASH1Q7L8A9 365 aaPredicted RBP15.75■□□□□ 0.11
SDC1-203ENST00000403076 GATAD2BQ8WXI9 593 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 ATF6BQ99941 703 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 ZNF649Q9BS31 505 aa15.75■□□□□ 0.11
SDC1-203ENST00000403076 ZNF254O75437 659 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 RPP14O95059 124 aaKnown RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 PTHP01270 115 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 MT-ND5P03915 603 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 CBR1P16152 277 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 PPP3CBP16298 524 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 APEX1P27695 318 aaKnown RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 CCKARP32238 428 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 OPRL1P41146 370 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 IDH3GP51553 393 aaPredicted RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 WNT4P56705 351 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 ROM1Q03395 351 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 EMX1Q04741 257 aaPredicted RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 MED22Q15528 200 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 SYS1Q8N2H4 156 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 OR52N1Q8NH53 320 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 SPRYD4Q8WW59 207 aaPredicted RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 ZC3HAV1LQ96H79 300 aaKnown RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 MED18Q9BUE0 208 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 OR10A4Q9H209 315 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 ISG20L2Q9H9L3 353 aaKnown RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 PNRC2Q9NPJ4 139 aaKnown RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 MRM2Q9UI43 246 aaKnown RBP15.74■□□□□ 0.11
SDC1-203ENST00000403076 LRP12Q9Y561 859 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 SLC25A15Q9Y619 301 aa15.74■□□□□ 0.11
SDC1-203ENST00000403076 F5H5K5 113 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 J3QKU1 62 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 SYNGR3O43761 229 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 SULT1C4O75897 302 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 APLNRP35414 380 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 PRKXP51817 358 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 GRB2P62993 217 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 TBCEQ15813 527 aaPredicted RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 DEGS2Q6QHC5 323 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms