RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 LAMP3Q9UQV4 416 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 TIMM9Q9Y5J7 89 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 C5orf49A4QMS7 147 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 GCAP28676 217 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 TPBGQ13641 420 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 NKAIN1Q4KMZ8 207 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 VRK3Q8IV63 474 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ASIC5Q9NY37 505 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 CTSFQ9UBX1 484 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 NTNG1Q9Y2I2 539 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SMLR1H3BR10 107 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 IGHV3-9P01782 118 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 P2RX3P56373 397 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 DHRS4L2Q6PKH6 230 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 USP51Q70EK9 711 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 BCORP1Q8N888 145 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC7A6Q92536 515 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SLAMF6Q96DU3 332 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 CROCCQ5TZA2 2017 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 APEX1P27695 318 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SDHAP31040 664 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 DHODHQ02127 395 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SELENBP1Q13228 472 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 KIAA0141Q14154 515 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ENDOGQ14249 297 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF750Q32MQ0 723 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 FAM26DQ5JW98 314 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 C19orf35Q6ZS72 473 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 MORN4Q8NDC4 146 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 OR10Z1Q8NGY1 313 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 OR5M11Q96RB7 305 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 C20orf24Q9BUV8 137 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 C4BP0C0L5 1744 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 NRASP01111 189 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 PIPP12273 146 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 NLRC3Q7RTR2 1065 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 SSX9Q7RTT3 188 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 YRDCQ86U90 279 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 LAT2Q9GZY6 243 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 NAA50Q9GZZ1 169 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 DEFB127Q9H1M4 99 aa11.69□□□□□ -0.54
CCDC88C-204ENST00000389857 LOC107986453A0A1B0GWG9 222 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 SIRPB1O00241 398 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 ADAM12O43184 909 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 TGOLN2O43493 480 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 F11P03951 625 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 CDK5Q00535 292 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 RNF151Q2KHN1 245 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 SPANXN5Q5MJ07 72 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 LAIR1Q6GTX8 287 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 OR2AK2Q8NG84 335 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 GPR37O15354 613 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 NME2P1O60361 137 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 IKZF5Q9H5V7 419 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 C7orf72A4D263 438 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 OR2A25A4D2G3 310 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 ST8SIA5O15466 376 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 HCCSP53701 268 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 EMP3P54852 163 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 RETREG3Q86VR2 466 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 OR10AD1Q8NGE0 317 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 OR1N1Q8NGS0 311 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 FBXW5Q969U6 566 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 CCDC74BQ96LY2 380 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 COMMD5Q9GZQ3 224 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 OR51I2Q9H344 312 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 M0R082 166 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 NPPBP16860 134 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 TPMTP51580 245 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 SYT6Q5T7P8 510 aaPredicted RBP11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 SARAFQ96BY9 339 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 Q96M85 177 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 SLC23A1Q9UHI7 598 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 H7BYZ3 331 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 ALOX5APP20292 161 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 HNF1AP20823 631 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 MYBPHQ13203 477 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 SIRT6Q8N6T7 355 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 CRYGNQ8WXF5 182 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 UFSP2Q9NUQ7 469 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 TMEM129A0AVI4 362 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 UMAD1C9J7I0 102 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 GUSBP08236 651 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 SRP9P49458 86 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 CELF2-AS1Q8N7Q2 184 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 OR51E1Q8TCB6 317 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 CMTM3Q96MX0 182 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 ZNF586Q9NXT0 402 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 NRXN3Q9Y4C0 1643 aa11.68□□□□□ -0.54
CCDC88C-204ENST00000389857 DDOSTP39656 456 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 C17orf107Q6ZR85 190 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 MEIKINA0A087WXM9 373 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 H0YIG0 161 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 PLPP1O14494 284 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 PDGFBP01127 241 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 DUSP5Q16690 384 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 PCK2Q16822 640 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 PLAC9Q5JTB6 97 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 PRSS45Q7RTY3 260 aa11.67□□□□□ -0.54
CCDC88C-204ENST00000389857 ACOXLQ9NUZ1 547 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms