RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ARL6IP5O75915 188 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 TXNDC12O95881 172 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 SDHAP31040 664 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ZNF117Q03924 483 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 OPCMLQ14982 345 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ALG10Q5BKT4 473 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ZNF766Q5HY98 468 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 EMC4Q5J8M3 183 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 FAM27D1Q5T7N8 215 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 SLC6A19Q695T7 634 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 LEG1Q6P5S2 330 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 FAM122BQ7Z309 247 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 MDS2Q8NDY4 140 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 OR6K6Q8NGW6 343 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ZNRF4Q8WWF5 429 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 MOGAT1Q96PD6 335 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ACTR6Q9GZN1 396 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 HDHD2Q9H0R4 259 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 EXTL2Q9UBQ6 330 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 TUBD1Q9UJT1 453 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 GNG8Q9UK08 70 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 A0A0G2JK05 382 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 AIPO00170 330 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 GPRIN2O60269 458 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 FADS1O60427 444 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 GMDSO60547 372 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 SELENOFO60613 162 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 TCRBP04435 133 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 NMBP08949 121 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 RAB3BP20337 219 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 NPR2P20594 1047 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 TACR3P29371 465 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 CDKN2AP42771 156 aaKnown RBP12.76□□□□□ -0.37
HMGA1-203ENST00000374116 CTXN1P60606 82 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ETFDHQ16134 617 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 C3P1Q6ZMU1 363 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 CHMP1BQ7LBR1 199 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 KRT74Q7RTS7 529 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 BVESQ8NE79 360 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ZPLD1Q8TCW7 415 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 PHYHIPQ92561 330 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 Q96M85 177 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 NPAS1Q99742 590 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 THAP7Q9BT49 309 aaPredicted RBP12.76□□□□□ -0.37
HMGA1-203ENST00000374116 ALG12Q9BV10 488 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 TMPRSS13Q9BYE2 586 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 BRD7Q9NPI1 651 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 NUDT15Q9NV35 164 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 RASD1Q9Y272 281 aa12.76□□□□□ -0.37
HMGA1-203ENST00000374116 TRBV2A0A0J9YWF9 115 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 PINLYPA6NC86 204 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 DNASE2O00115 360 aaPredicted RBP12.75□□□□□ -0.37
HMGA1-203ENST00000374116 GMFGO60234 142 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 HIST1H2ABP04908 130 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 SP1P08047 785 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 SSTR2P30874 369 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 DNASE1L1P49184 302 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 LTBQ06643 244 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 MADCAM1Q13477 382 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 GSG1Q2KHT4 349 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 LINC01590Q5TEZ4 76 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 OR5M10Q6IEU7 315 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 Q6ZS92 163 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 HIST3H2AQ7L7L0 130 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 MARCH3Q86UD3 253 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 SULF2Q8IWU5 870 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 PIAS4Q8N2W9 510 aaPredicted RBP12.75□□□□□ -0.37
HMGA1-203ENST00000374116 Q8NA96 180 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 HIST1H2ACQ93077 130 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 YIPF5Q969M3 257 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 JSRP1Q96MG2 331 aaPredicted RBP12.75□□□□□ -0.37
HMGA1-203ENST00000374116 TTTY10Q9BZA0 68 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 ZCCHC4Q9H5U6 513 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 FKRPQ9H9S5 495 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 PFDN2Q9UHV9 154 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 SPTA1P02549 2419 aa12.75□□□□□ -0.37
HMGA1-203ENST00000374116 ATXN7O15265 892 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 HCRTR2O43614 444 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 CDC40O60508 579 aaKnown RBP eCLIP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 WISP2O76076 250 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 UCHL1P09936 223 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 CXCR1P25024 350 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 EDNRAP25101 427 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 OR10A3P58181 314 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PRR30Q53SZ7 412 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 SLC22A10Q63ZE4 541 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 SLC25A25Q6KCM7 469 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 BTN2A1Q7KYR7 527 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 SLC16A9Q7RTY1 509 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 SAMD12Q8N8I0 201 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 HSD17B8Q92506 261 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 KTI12Q96EK9 354 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-203ENST00000374116 TBL1XR1Q9BZK7 514 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PROK2Q9HC23 129 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 GRHPRQ9UBQ7 328 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PCNX3Q9H6A9 2034 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 COL6A6A6NMZ7 2263 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 PQLC2LA1A4F0 135 aa12.74□□□□□ -0.37
HMGA1-203ENST00000374116 ANKRD61A6NGH8 418 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms