RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 OTULINQ96BN8 352 aa13□□□□□ -0.33
SMPDL3A-201ENST00000368440 C1orf198Q9H425 327 aa13□□□□□ -0.33
SMPDL3A-201ENST00000368440 CBLN4Q9NTU7 201 aa13□□□□□ -0.33
SMPDL3A-201ENST00000368440 GMPPBQ9Y5P6 360 aa13□□□□□ -0.33
SMPDL3A-201ENST00000368440 CELSR1Q9NYQ6 3014 aa13□□□□□ -0.33
SMPDL3A-201ENST00000368440 VPS13CQ709C8 3753 aa13□□□□□ -0.33
SMPDL3A-201ENST00000368440 PRRC2AP48634 2157 aaKnown RBP13□□□□□ -0.33
SMPDL3A-201ENST00000368440 C5orf49A4QMS7 147 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 M0R129 80 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 SGCEO43556 437 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR4A8P0C604 315 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 GGT2P36268 569 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 WNT5AP41221 380 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 PTH2RP49190 550 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ERVS71-1P61550 626 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ESRRGP62508 458 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 GALK2Q01415 458 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 USP51Q70EK9 711 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 KRTAP1-3Q8IUG1 177 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZNF511Q8NB15 262 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR10H5Q8NGA6 315 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 SLC7A6Q92536 515 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 PTP4A1Q93096 173 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 WACQ9BTA9 647 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 CXorf56Q9H5V9 222 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZNF442Q9H7R0 627 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 WDR76Q9H967 626 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 HINT3Q9NQE9 182 aaKnown RBP12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 AASSQ9UDR5 926 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 NDUFS7O75251 213 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 HMGN1P05114 100 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 HTR5AP47898 357 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 GDI2P50395 445 aaKnown RBP12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 HIST1H3AP68431 136 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 IL5RAQ01344 420 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 SWI5Q1ZZU3 235 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 HIST2H3PS2Q5TEC6 136 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 LINC01590Q5TEZ4 76 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 SLC18B1Q6NT16 456 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 PLBD1Q6P4A8 553 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 CFAP77Q6ZQR2 320 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 HIST2H3AQ71DI3 136 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ALDH16A1Q8IZ83 802 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZNF101Q8IZC7 436 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 BBS1Q8NFJ9 593 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR1J2Q8NGS2 313 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR6K6Q8NGW6 343 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 CACNG6Q9BXT2 260 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 GRIP2Q9C0E4 1043 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZNF701Q9NV72 531 aaPredicted RBP12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 PLEK2Q9NYT0 353 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 TVP23BQ9NYZ1 205 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 SCOCQ9UIL1 159 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 FZR1Q9UM11 496 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 COMMD3-BMI1R4GMX3 469 aa12.99□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZAR1LA6NP61 321 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 SYNGR3O43761 229 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 SERPINF1P36955 418 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 CPOQ8IVL8 374 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 GSX2Q9BZM3 304 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 CYB5R1Q9UHQ9 305 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 GDF2Q9UK05 429 aaPredicted RBP12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 SPEF1Q9Y4P9 236 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 MAP1AP78559 2803 aaPredicted RBP12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 RTTNQ86VV8 2226 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 ARFGEF3Q5TH69 2177 aa12.98□□□□□ -0.33
SMPDL3A-201ENST00000368440 TMEM129A0AVI4 362 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR6C6A6NF89 314 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 PRR23D1E9PI22 279 aaPredicted RBP12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 SLC16A6O15403 523 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 TNFAIP8O95379 198 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 PRR23D2P0DMB1 279 aaPredicted RBP12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 PAX1P15863 534 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 GLRXP35754 106 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 ADAM8P78325 824 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 SNAPC1Q16533 368 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZNF691Q5VV52 312 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 SLX4IPQ5VYV7 408 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 RFPL4BQ6ZWI9 263 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 THAP5Q7Z6K1 395 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 LRP11Q86VZ4 500 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 LRRC75A-AS1Q8N1F1 130 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 UBE2FQ969M7 185 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 GABARAPL3Q9BY60 117 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 MRPL37Q9BZE1 423 aaKnown RBP12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR51V1Q9H2C8 321 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 USF3Q68DE3 2245 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 PRKYO43930 277 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 TMCC2O75069 709 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 DBHP09172 617 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 COX5BP10606 129 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 ATP6V1B1P15313 513 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZNF823P16415 610 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 FMO3P31513 532 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 UCP2P55851 309 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 RAB35Q15286 201 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 EFNB3Q15768 340 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 C12orf73Q69YU5 71 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 GJC3Q8NFK1 279 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR1F12Q8NHA8 337 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 211.9 ms