RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 A0A1W2PRD5 423 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 A0A1W2PRF3 423 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 A0A1W2PRM7 423 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 HNRNPCL2B2RXH8 293 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 HNRNPCL3B7ZW38 293 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 F5H5P2 479 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 COPEO14579 308 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 HNRNPCL1O60812 293 aaKnown RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 FSTL3O95633 263 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 THY1P04216 161 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 ALDOCP09972 364 aaKnown RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 HNRNPCL4P0DMR1 293 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 VSIG10L2P0DP72 767 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 TNFSF4P23510 183 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 PAX6P26367 422 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 EPHA3P29320 983 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 CCT5P48643 541 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 CRISP3P54108 245 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 DSTNP60981 165 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 MRPS34P82930 218 aaKnown RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 HABP2Q14520 560 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 OR1Q1Q15612 314 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 C10orf128Q5T292 105 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 FAM91A1Q658Y4 838 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 ULK3Q6PHR2 472 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 CRIP3Q6Q6R5 217 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 DCDC5Q6ZRR9 648 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 TSPYL5Q86VY4 417 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 C10orf111Q8N326 155 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 CLDN22Q8N7P3 220 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 SCCPDHQ8NBX0 429 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 NOXO1Q8NFA2 376 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 WIPF2Q8TF74 440 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 C17orf50Q8WW18 174 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 DNAJA4Q8WW22 397 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 SLC35B4Q969S0 331 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 HAVCR1Q96D42 359 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 TECTBQ96PL2 329 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 CITED2Q99967 270 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 CCNB1IP1Q9NPC3 277 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 MAN2C1Q9NTJ4 1040 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 MKS1Q9NXB0 559 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 HERC2O95714 4834 aa6.94□□□□□ -1.3
HMGB1P39-201ENST00000366304 C3orf84H3BNL1 204 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 RNF13O43567 381 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 ITM2AO43736 263 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CHST1O43916 411 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 OR10H3O60404 316 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 TRMUO75648 421 aaKnown RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 KRT4P19013 534 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 LAP3P28838 519 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 HOXD3P31249 432 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CRATP43155 626 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 ETV4P43268 484 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 KIR2DS4P43632 304 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CLRN1P58418 232 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 ELF3P78545 371 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 TXNL4AP83876 142 aaKnown RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 KLRD1Q13241 179 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 MAD2L1Q13257 205 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 ENDOGQ14249 297 aaKnown RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 TAF11Q15544 211 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 SGCAQ16586 387 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 ZNF74Q16587 644 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CLEC12AQ5QGZ9 265 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CASC10Q5T4H9 136 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 NLRC3Q7RTR2 1065 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 VMO1Q7Z5L0 202 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 RANBP3LQ86VV4 465 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CALHM3Q86XJ0 350 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 ATG16L2Q8NAA4 619 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 OR4S1Q8NGB4 309 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 VANGL1Q8TAA9 524 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 ASB10Q8WXI3 467 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 LRTOMTQ8WZ04 291 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 SLC7A6Q92536 515 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 NSMAFQ92636 917 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 AJUBAQ96IF1 538 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 OR52E6Q96RD3 313 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 EPYCQ99645 322 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 TMEM43Q9BTV4 400 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 C20orf27Q9GZN8 174 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CNTD2Q9H8S5 307 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 BCL2L10Q9HD36 194 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 C20orf141Q9NUB4 165 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CALML5Q9NZT1 146 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 DNAJB11Q9UBS4 358 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 IFT52Q9Y366 437 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 U3KQK5 164 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 PCLOQ9Y6V0 5065 aa6.93□□□□□ -1.3
HMGB1P39-201ENST00000366304 CSMD3Q7Z407 3707 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 HUWE1Q7Z6Z7 4374 aaKnown RBP6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 LCE6AA0A183 80 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 A0A1B0GW55 424 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 ANKRD61A6NGH8 418 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 SMIM23A6NLE4 172 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 SURF4O15260 269 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 ENTPD5O75356 428 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 CH25HO95992 272 aa6.92□□□□□ -1.3
HMGB1P39-201ENST00000366304 IGHG1P01857 330 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms