RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MRPS7Q9Y2R9 242 aaKnown RBP11.47□□□□□ -0.57
CLK3-201ENST00000345005 MRPS18BQ9Y676 258 aaKnown RBP11.47□□□□□ -0.57
CLK3-201ENST00000345005 WDFY3Q8IZQ1 3526 aa11.47□□□□□ -0.57
CLK3-201ENST00000345005 KIAA1549Q9HCM3 1950 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 PRSS37A4D1T9 235 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 A6NIZ1 184 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 NPIPB13A6NJU9 1138 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 NPIPB4C9JG80 1138 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 TFP02787 698 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 ATF4P18848 351 aaPredicted RBP11.46□□□□□ -0.57
CLK3-201ENST00000345005 IL11P20809 199 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 CSRP1P21291 193 aaKnown RBP11.46□□□□□ -0.57
CLK3-201ENST00000345005 CALCRP30988 508 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 PYCR1P32322 319 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 FAUP35544 74 aaKnown RBP11.46□□□□□ -0.57
CLK3-201ENST00000345005 NAA10P41227 235 aaPredicted RBP11.46□□□□□ -0.57
CLK3-201ENST00000345005 CYB561P49447 251 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 CENPAP49450 140 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 MECP2P51608 486 aaKnown RBP11.46□□□□□ -0.57
CLK3-201ENST00000345005 SCAND1P57086 179 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 RAP1BP61224 184 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 TSPAN5P62079 268 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 RAP1AP62834 184 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 SIRPAP78324 504 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 TLE3Q04726 772 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 MYBPHQ13203 477 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 SLC25A35Q3KQZ1 300 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 EEF1A1P5Q5VTE0 462 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 OLFML2AQ68BL7 652 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 TMEM65Q6PI78 240 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 LINC00518Q8N0U6 118 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 ADPRHL1Q8NDY3 354 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 CCDC120Q96HB5 630 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 GNRHR2Q96P88 292 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 IFT22Q9H7X7 185 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 PFDN2Q9UHV9 154 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 HDGFL3Q9Y3E1 203 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 ZNF175Q9Y473 711 aa11.46□□□□□ -0.57
CLK3-201ENST00000345005 PCDHGA9Q9Y5G4 932 aaKnown RBP11.46□□□□□ -0.57
CLK3-201ENST00000345005 KLF2Q9Y5W3 355 aaPredicted RBP11.46□□□□□ -0.57
CLK3-201ENST00000345005 HMSDA8MTL9 139 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 L7N2F9 121 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 CREBL2O60519 120 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 MPC2O95563 127 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 PLGP00747 810 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 HOXD4P09016 255 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 CALCBP10092 127 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 ATF1P18846 271 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 NFYAP23511 347 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 MAPK3P27361 379 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 GDI2P50395 445 aaKnown RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 DAP3P51398 398 aaKnown RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 CCR6P51684 374 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 HCCSP53701 268 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 AIMP2Q13155 320 aaKnown RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 CDK5R1Q15078 307 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 NHLRC3Q5JS37 347 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 DCAF10Q5QP82 559 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 GLDNQ6ZMI3 551 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 SLC16A9Q7RTY1 509 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 MDGA2Q7Z553 956 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 BEST3Q8N1M1 668 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 MEIOBQ8N635 442 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 RELTQ969Z4 430 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 JSRP1Q96MG2 331 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 C5orf34Q96MH7 638 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 TSSK2Q96PF2 358 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 SYT4Q9H2B2 425 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 METTL17Q9H7H0 456 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 HRASLSQ9HDD0 168 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 FANCFQ9NPI8 374 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 VSX1Q9NZR4 365 aaPredicted RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 ABI3Q9P2A4 366 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 IL17BQ9UHF5 180 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 DKKL1Q9UK85 242 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 NOSIPQ9Y314 301 aaKnown RBP11.46□□□□□ -0.58
CLK3-201ENST00000345005 ETV7Q9Y603 341 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 CNTRLQ7Z7A1 2325 aa11.46□□□□□ -0.58
CLK3-201ENST00000345005 MED13Q9UHV7 2174 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 FAM186AA6NE01 2351 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 NCKAP5O14513 1909 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 FAM171A2A8MVW0 826 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 E9PI62 339 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 NPIPA5E9PKD4 350 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 H7C1C5 153 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 AIPO00170 330 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 SELENOFO60613 162 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 OR2A4O95047 310 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 MT-ND4P03905 459 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 OR12D2P58182 307 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 GMFBP60983 142 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 LCN6P62502 163 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 FOXK1P85037 733 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 ABHD17BQ5VST6 288 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 ZNF511Q8NB15 262 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 OR5M1Q8NGP8 315 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 SMAP2Q8WU79 429 aaPredicted RBP11.45□□□□□ -0.58
CLK3-201ENST00000345005 SNX33Q8WV41 574 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 FER1L6-AS2Q96M78 137 aa11.45□□□□□ -0.58
CLK3-201ENST00000345005 OR5B2Q96R09 309 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms