RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BSPH1Q075Z2 132 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 RAB40BQ12829 278 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 RAB35Q15286 201 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 BEX5Q5H9J7 111 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 SLC30A7Q8NEW0 376 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 SLAMF6Q96DU3 332 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 PLPPR2Q96GM1 343 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 ESRP2Q9H6T0 727 aaKnown RBP19.24■□□□□ 0.67
SDC3-202ENST00000339394 UBAP1Q9NZ09 502 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 LRRC42Q9Y546 428 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 TMEM14AQ9Y6G1 99 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 ICE1Q9Y2F5 2266 aa19.24■□□□□ 0.67
SDC3-202ENST00000339394 OR6C6A6NF89 314 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 PTHP01270 115 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 OR2T7P0C7T2 308 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 CCL2P13500 99 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 COX6B1P14854 86 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 PTAFRP25105 342 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 CXCR4P61073 352 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 DAZAP2Q15038 168 aaPredicted RBP19.23■□□□□ 0.67
SDC3-202ENST00000339394 KLHL22Q53GT1 634 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 OR10H4Q8NGA5 316 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 OR2T27Q8NH04 317 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 OR1F12Q8NHA8 337 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 MNTQ99583 582 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 TBX5Q99593 518 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 RHNO1Q9BSD3 238 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 HDHD2Q9H0R4 259 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 CENPMQ9NSP4 180 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 PLCXD1Q9NUJ7 323 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 MYRFQ9Y2G1 1151 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 LOC100509620A0A075B734 347 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 COX5BP10606 129 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 APLNRP35414 380 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 HTR5AP47898 357 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 NAAAQ02083 359 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 MED21Q13503 144 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 NCMAPQ5T1S8 102 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 SPATC1Q76KD6 591 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 RFLNBQ8N5W9 214 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 RNF133Q8WVZ7 376 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 SLC7A6Q92536 515 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 GGHQ92820 318 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 POM121L2Q96KW2 1035 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 ATF6BQ99941 703 aa19.23■□□□□ 0.67
SDC3-202ENST00000339394 DOPEY2Q9Y3R5 2298 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 A0A1W2PQL4 384 aaPredicted RBP19.22■□□□□ 0.67
SDC3-202ENST00000339394 C5orf49A4QMS7 147 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 SLC1A7O00341 560 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 FADS2O95864 444 aaKnown RBP19.22■□□□□ 0.67
SDC3-202ENST00000339394 CSNK2BP67870 215 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 IL17RDQ8NFM7 739 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 OR52I1Q8NGK6 324 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 COQ7Q99807 217 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 DDX28Q9NUL7 540 aaKnown RBP19.22■□□□□ 0.67
SDC3-202ENST00000339394 PCDHGB1Q9Y5G3 927 aa19.22■□□□□ 0.67
SDC3-202ENST00000339394 ZNF670-ZNF695F2Z2N8 137 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 ABCD4O14678 606 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 FAM20BO75063 409 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 ZNF35P13682 527 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 CCNOP22674 350 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 ECH1Q13011 328 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 TBC1D28Q2M2D7 210 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 RSPO1Q2MKA7 263 aaPredicted RBP19.21■□□□□ 0.67
SDC3-202ENST00000339394 RHOUQ7L0Q8 258 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 PAQR4Q8N4S7 273 aaPredicted RBP19.21■□□□□ 0.67
SDC3-202ENST00000339394 ASB17Q8WXJ9 295 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 PIK3IP1Q96FE7 263 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 TTTY10Q9BZA0 68 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 PSORS1C1Q9UIG5 152 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 ATPIF1Q9UII2 106 aa19.21■□□□□ 0.67
SDC3-202ENST00000339394 IGHV2OR16-5A0A0B4J2B6 119 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 A6NNC1 897 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 PRR32B1ATL7 298 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 ZNF878C9JN71 531 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 CRYAAP02489 173 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 DBHP09172 617 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 LOXP28300 417 aaPredicted RBP19.2■□□□□ 0.66
SDC3-202ENST00000339394 CALCRP30988 508 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 OPRL1P41146 370 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 GDI2P50395 445 aaKnown RBP19.2■□□□□ 0.66
SDC3-202ENST00000339394 NR1H2P55055 460 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 ACTC1P68032 377 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 ACTA1P68133 377 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 SPOCK1Q08629 439 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 KCTD18Q6PI47 426 aaPredicted RBP19.2■□□□□ 0.66
SDC3-202ENST00000339394 ZNF322Q6U7Q0 402 aaPredicted RBP19.2■□□□□ 0.66
SDC3-202ENST00000339394 SSX6Q7RTT6 188 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 PIAS4Q8N2W9 510 aaPredicted RBP19.2■□□□□ 0.66
SDC3-202ENST00000339394 ACBD7Q8N6N7 88 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 COPS4Q9BT78 406 aa19.2■□□□□ 0.66
SDC3-202ENST00000339394 EFCAB10A6NFE3 127 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 F5H5K5 113 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 PSMD9O00233 223 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 PHYHO14832 338 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 IGHA1P01876 353 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 CCDC159P0C7I6 412 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 GALK2Q01415 458 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 LRRN1Q6UXK5 716 aa19.19■□□□□ 0.66
SDC3-202ENST00000339394 ZNF786Q8N393 782 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms