RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 FGF22Q9HCT0 170 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 A0A087WZY1 265 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 SH2D1BO14796 132 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ICOSLGO75144 302 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 OPRM1P35372 400 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 SRPXP78539 464 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 RAB35Q15286 201 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 HMGN3Q15651 99 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 FAAP20Q6NZ36 180 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 MRPS24Q96EL2 167 aaKnown RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 MBOAT4Q96T53 435 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 RNF167Q9H6Y7 350 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 EVA1AQ9H8M9 152 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ZNF724A8MTY0 619 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 PLPP1O14494 284 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 CT45A10P0DMU9 189 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 NPPBP16860 134 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 PI3P19957 117 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 MTNR1BP49286 362 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 UBE2MP61081 183 aaKnown RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 CXorf67Q86X51 503 aaPredicted RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 KCNRGQ8N5I3 272 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 TSLPQ969D9 159 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 MED17Q9NVC6 651 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 CLEC5AQ9NY25 188 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 FZR1Q9UM11 496 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 NAV1Q8NEY1 1877 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ANKRD12Q6UB98 2062 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 CLDN24A6NM45 220 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ZMAT1Q5H9K5 638 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 OR4F5Q8NH21 305 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 APH1BQ8WW43 257 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ROBO4Q8WZ75 1007 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 FBXW5Q969U6 566 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ZNF583Q96ND8 569 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 OR4F4Q96R69 305 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ZNF835Q9Y2P0 537 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 GGTA1PQ4G0N0 100 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 LGI3Q8N145 548 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 CPEB3Q8NE35 698 aaKnown RBP11.52□□□□□ -0.56
SDC3-201ENST00000336798 TMEM231Q9H6L2 316 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 ONECUT1Q9UBC0 465 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 GLB1P16278 677 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 TAF9Q16594 264 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 TOR2AQ5JU69 321 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 KDF1Q8NAX2 398 aaPredicted RBP11.52□□□□□ -0.56
SDC3-201ENST00000336798 NEURL3Q96EH8 262 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 TEX37Q96LM6 180 aa11.52□□□□□ -0.56
SDC3-201ENST00000336798 ESRP2Q9H6T0 727 aaKnown RBP11.52□□□□□ -0.56
SDC3-201ENST00000336798 ZNF346Q9UL40 294 aaKnown RBP11.52□□□□□ -0.56
SDC3-201ENST00000336798 POM121BA6NF01 834 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 OR2J2O76002 312 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 PTBP3O95758 552 aaKnown RBP11.52□□□□□ -0.57
SDC3-201ENST00000336798 SOD1P00441 154 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 DTYMKP23919 212 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 MRPL19P49406 292 aaKnown RBP11.52□□□□□ -0.57
SDC3-201ENST00000336798 RBP2P50120 134 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 BAMBIQ13145 260 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 GRINAQ7Z429 371 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 TMEM179BQ7Z7N9 219 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 TMEM200AQ86VY9 491 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 BCL7CQ8WUZ0 217 aaPredicted RBP11.52□□□□□ -0.57
SDC3-201ENST00000336798 TMEM230Q96A57 120 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 AKR1E2Q96JD6 320 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 OR7C2O60412 319 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 NKX2-1P43699 371 aaPredicted RBP11.52□□□□□ -0.57
SDC3-201ENST00000336798 INSM1Q01101 510 aaPredicted RBP11.52□□□□□ -0.57
SDC3-201ENST00000336798 KCNIP2Q9NS61 270 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 CHRNA9Q9UGM1 479 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 AK3Q9UIJ7 227 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 CHST2Q9Y4C5 530 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 LOXL2Q9Y4K0 774 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 CSAG2Q9Y5P2 127 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 LOC107986453A0A1B0GWG9 222 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 ADH4P08319 380 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 MMP11P24347 488 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 SOX18P35713 384 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 CDC20BQ86Y33 519 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 LSMEM1Q8N8F7 131 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 SLAMF6Q96DU3 332 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 UBQLN3Q9H347 655 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 BCO1Q9HAY6 547 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 SLC35D1Q9NTN3 355 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 CORINQ9Y5Q5 1042 aa11.52□□□□□ -0.57
SDC3-201ENST00000336798 OR2W5A6NFC9 320 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 GLAP06280 429 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 ZNF816Q0VGE8 651 aaPredicted RBP11.51□□□□□ -0.57
SDC3-201ENST00000336798 RTL8BQ17RB0 113 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 TMEM99Q8N816 258 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 OR13C5Q8NGS8 318 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 OR2AE1Q8NHA4 323 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 RHOXF1Q8NHV9 184 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 SOX7Q9BT81 388 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 PDE4DIPQ5VU43 2346 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 A0A087WV62 115 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 IDSB3KWA1 339 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 METTL15P1P0C7V9 234 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 FOXB2Q5VYV0 432 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 ANKRD34AQ69YU3 496 aa11.51□□□□□ -0.57
SDC3-201ENST00000336798 GPR119Q8TDV5 335 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms