RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 WBP1Q96G27 269 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 MED18Q9BUE0 208 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 HDHD2Q9H0R4 259 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 KCNN2Q9H2S1 579 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 FRRS1LQ9P0K9 344 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 PIEZO2Q9H5I5 2752 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 ATMQ13315 3056 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 ZZEF1O43149 2961 aa13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 PRRC2CQ9Y520 2896 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-202ENST00000334448 PNMA8CA0A1B0GUJ8 204 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 ACOD1A6NK06 481 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 PSMD9O00233 223 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 GABRPO00591 440 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 RER1O15258 196 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 TNFSF13O75888 250 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 FARS2O95363 451 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 TPOP07202 933 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 MMP7P09237 267 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 H2BFMP0C1H6 154 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 EDN3P14138 238 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 B4GALT1P15291 398 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 CEACAM8P31997 349 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 PSMB10P40306 273 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 MAP1BP46821 2468 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 ARF1P84077 181 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 SLC3A1Q07837 685 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 ECH1Q13011 328 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 RAB35Q15286 201 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 KRTAP27-1Q3LI81 207 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 OR7E24Q6IFN5 339 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF585AQ6P3V2 769 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 UNQ9370/PRO34162Q6UXP9 181 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF813Q6ZN06 617 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 PKD1L2Q7Z442 2459 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 CD163Q86VB7 1156 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 PRSS35Q8N3Z0 413 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 ABHD4Q8TB40 342 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 NDNFQ8TB73 568 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 FBXO17Q96EF6 278 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 KCTD7Q96MP8 289 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 TMED9Q9BVK6 235 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 DCSTAMPQ9H295 470 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 TP63Q9H3D4 680 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 CCDC59Q9P031 241 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 UPB1Q9UBR1 384 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 GSTK1Q9Y2Q3 226 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF281Q9Y2X9 895 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 SPTA1P02549 2419 aa13.09□□□□□ -0.31
CCDC88C-202ENST00000334448 SPENQ96T58 3664 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 BOD1L1Q8NFC6 3051 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 TRBV5-5A0A0J9YX44 114 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 OR6C6A6NF89 314 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 ERVH48-1M5A8F1 160 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNHIT1O43257 154 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 LRRTM2O43300 516 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 IL18BPO95998 194 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 PNPP00491 289 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 IL1AP01583 271 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 ISG15P05161 165 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 CD8BP10966 210 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 COX5AP20674 150 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 KIR3DL2P43630 455 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 LSM3P62310 102 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 CCDC92Q53HC0 331 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 WDR38Q5JTN6 314 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 ELFN2Q5R3F8 820 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 LINC00299Q6ZSB3 139 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 Q6ZT83 130 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 RGP1Q92546 391 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 TMEM203Q969S6 136 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 DCLRE1CQ96SD1 692 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 EXOSC4Q9NPD3 245 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 G6PC2Q9NQR9 355 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 PLSCR4Q9NRQ2 329 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 FAM206AQ9NX38 181 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 NUFIP1Q9UHK0 495 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 PRSS50Q9UI38 385 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 TIMM10BQ9Y5J6 103 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 A3GALT2U3KPV4 340 aa13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 DSPP15924 2871 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-202ENST00000334448 PRRG2O14669 202 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 TOXO94900 526 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 RPP14O95059 124 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 CGAP01215 116 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 IGHV3-9P01782 118 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 APOC1P02654 83 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ITGA5P08648 1049 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 UCHL1P09936 223 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 HOXB1P14653 301 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ABOP16442 354 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF182P17025 639 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 CRYGSP22914 178 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 MFGE8Q08431 387 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 FAPQ12884 760 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 C22orf42Q6IC83 251 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ANKRD16Q6P6B7 361 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 SLC16A14Q7RTX9 510 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 SKA3Q8IX90 412 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms