RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 NUDCD2Q8WVJ2 157 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 MOGAT1Q96PD6 335 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 GGACTQ9BVM4 153 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 SYT4Q9H2B2 425 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 MKKSQ9NPJ1 570 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC17A2O00624 439 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 HOXA2O43364 376 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 GMFGO60234 142 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 PPICP45877 212 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 LPCAT3Q6P1A2 487 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF561Q8N587 486 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 SEMA6DQ8NFY4 1073 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 FAM46BQ96A09 425 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF775Q96BV0 537 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 MEGF10Q96KG7 1140 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 TAS2R4Q9NYW5 299 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 CACFD1Q9UGQ2 172 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 INSL6Q9Y581 213 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 OR8U9P0C7N5 309 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 RBM34P42696 430 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 CTXN1P60606 82 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 EBPQ15125 230 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 OR8U1Q8NH10 309 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 EGLN1Q9GZT9 426 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 LMAN2LQ9H0V9 348 aa12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 METTL1Q9UBP6 276 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-201ENST00000331194 EFSO43281 561 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 LMX1BO60663 402 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 STK17BO94768 372 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 IGHV2-5P01817 119 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 RHOP08100 348 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC9A3R2Q15599 337 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 SSX2Q16385 188 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC35D3Q5M8T2 416 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 RPL7L1Q6DKI1 246 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 ZNF584Q8IVC4 421 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 RAB42Q8N4Z0 105 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 CSNK1A1LQ8N752 337 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 C15orf54Q8N8G6 183 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 MFSD9Q8NBP5 474 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 KXD1Q9BQD3 176 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 ELOVL3Q9HB03 270 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 COL4A6Q14031 1691 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 CXorf51AA0A1B0GTR3 108 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 M0R036 132 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 HRKO00198 91 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 MBTPS2O43462 519 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 RDH16O75452 317 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 PRNPP04156 253 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 SFTPCP11686 197 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 HRH1P35367 487 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 EIF2S3P41091 472 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 MAP3K8P41279 467 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 NUBP1P53384 320 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 RELQ04864 619 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 ALG11Q2TAA5 492 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 AWAT1Q58HT5 328 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 RNASE10Q5GAN6 216 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 LINC00114Q6XXX2 140 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 IL34Q6ZMJ4 242 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 FJX1Q86VR8 437 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 CDC20BQ86Y33 519 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC39A11Q8N1S5 342 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 JAGN1Q8N5M9 183 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 CDRT4Q8N9R6 151 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 CHST4Q8NCG5 386 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 OR2L8Q8NGY9 312 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 AKR7LQ8NHP1 331 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 MARCH1Q8TCQ1 289 aa12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 SLC25A43Q8WUT9 341 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-201ENST00000331194 C7orf77A4D0Y5 90 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 FREM3P0C091 2139 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 HTR2CP28335 458 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 RNF212Q495C1 297 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 ULK3Q6PHR2 472 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 ERN2Q76MJ5 926 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 KIRREL1Q96J84 757 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 C4orf45Q96LM5 186 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 TMEM68Q96MH6 324 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 LRRC3BQ96PB8 259 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 SDK1Q7Z5N4 2213 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 FRYLO94915 3013 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 MED19A0JLT2 244 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 ARGFXA6NJG6 315 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 PPIHO43447 177 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 PMP2P02689 132 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 FCGR3AP08637 254 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 ALOX5APP20292 161 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 MEP1BQ16820 701 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 TRIM2Q9C040 744 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 DUSP22Q9NRW4 184 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 DAPP1Q9UN19 280 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 AMDHD2Q9Y303 409 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 TMEM212A6NML5 194 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 TERTO14746 1132 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 TIMP1P01033 207 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 CD5P06127 495 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 LAP3P28838 519 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 P2RY2P41231 377 aa12.09□□□□□ -0.47
CCDC88C-201ENST00000331194 FBXO42Q6P3S6 717 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms