RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 PRKXP51817 358 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 SH3BGRP55822 239 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 RAB39AQ14964 217 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 TAF13Q15543 124 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 CCDC92Q53HC0 331 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 KLBQ86Z14 1044 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 CPEB3Q8NE35 698 aaKnown RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 GJC3Q8NFK1 279 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 MROQ9BYG7 248 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 YTHDF1Q9BYJ9 559 aaKnown RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 OR2H1Q9GZK4 316 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 ELOVL3Q9HB03 270 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 JKAMPQ9P055 326 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 MRM2Q9UI43 246 aaKnown RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 LRP12Q9Y561 859 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 SPTBN1Q01082 2364 aaKnown RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 IRGMA1A4Y4 181 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 LALBAP00709 142 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 MMP7P09237 267 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 H2BFMP0C1H6 154 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 ANOS1P23352 680 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 HSD11B1P28845 292 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 HTR5AP47898 357 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 SLC6A9P48067 706 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 TAB1Q15750 504 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 KCNMB1Q16558 191 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 NAA40Q86UY6 237 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 PIP4P2Q8N4L2 257 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 KLHL36Q8N4N3 616 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 ITLN2Q8WWU7 325 aaPredicted RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 SIGLEC11Q96RL6 698 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 WNT5BQ9H1J7 359 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 ACOT13Q9NPJ3 140 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 PNRC2Q9NPJ4 139 aaKnown RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 EXOSC1Q9Y3B2 195 aaKnown RBP13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 PCDHGB1Q9Y5G3 927 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 TMEM14AQ9Y6G1 99 aa13.43□□□□□ -0.26
PDLIM5-202ENST00000318007 A0A087WXM4 84 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 E9PI62 339 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 C16orf97H3BN30 126 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 INMTO95050 263 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 KRT8P05787 483 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 PSMB9P28065 219 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 ASCL1P50553 236 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 PCK2Q16822 640 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 VASH1Q7L8A9 365 aaPredicted RBP13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 LILRB4Q8NHJ6 448 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 PPP1R14AQ96A00 147 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 ATF6BQ99941 703 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 MND1Q9BWT6 205 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 CDCA4Q9BXL8 241 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 KCNJ16Q9NPI9 418 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 SLC17A5Q9NRA2 495 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 TIMM10BQ9Y5J6 103 aa13.42□□□□□ -0.26
PDLIM5-202ENST00000318007 OR5H1A6NKK0 313 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 PCMT1P22061 227 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 ZNF83P51522 516 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 SCRN3Q0VDG4 424 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 GFOD2Q3B7J2 385 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 ELFN2Q5R3F8 820 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 ZNF627Q7L945 461 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 FAM220AQ7Z4H9 259 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 WFDC8Q8IUA0 241 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 ZNF584Q8IVC4 421 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 NANOGP1Q8N7R0 232 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 WDR31Q8NA23 367 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 LINC01560Q8TB33 94 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 ASB5Q8WWX0 329 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 MED18Q9BUE0 208 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 LRBAP50851 2863 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 C5orf49A4QMS7 147 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 ZNF878C9JN71 531 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 UBL3O95164 117 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 CLPTM1O96005 669 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 PSMB1P20618 241 aaKnown RBP13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 WNT4P56705 351 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 PRSS12P56730 875 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 MFGE8Q08431 387 aaPredicted RBP13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 TEX30Q5JUR7 227 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 LIPNQ5VXI9 398 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 KCTD18Q6PI47 426 aaPredicted RBP13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 ZNF454Q8N9F8 522 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 RNF133Q8WVZ7 376 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 NANOS1Q8WY41 292 aaKnown RBP13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 PELI1Q96FA3 418 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 OR8B4Q96RC9 309 aa13.41□□□□□ -0.26
PDLIM5-202ENST00000318007 TRIM64A6NGJ6 449 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 M0R1B8 84 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 OPRL1P41146 370 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 PCBD1P61457 104 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 ACTA2P62736 377 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 ACTG2P63267 376 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 IRF3Q14653 427 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 PPA1Q15181 289 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 SLC25A35Q3KQZ1 300 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 CDONQ4KMG0 1287 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 MTFR2Q6P444 385 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 TMPRSS11AQ6ZMR5 421 aa13.4□□□□□ -0.26
PDLIM5-202ENST00000318007 ZNF679Q8IYX0 411 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms