RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 UBE2J2Q8N2K1 259 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 TMEM178AQ8NBL3 297 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 CPNE4Q96A23 557 aaPredicted RBP14.56□□□□□ -0.08
USP4-201ENST00000265560 MNTQ99583 582 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 MRPS18CQ9Y3D5 142 aaKnown RBP14.56□□□□□ -0.08
USP4-201ENST00000265560 V9GYH0 126 aa14.56□□□□□ -0.08
USP4-201ENST00000265560 FABP12A6NFH5 140 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 FAM25AB3EWG3 89 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 FAM25CB3EWG5 89 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 FAM25GB3EWG6 89 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 GPRIN2O60269 458 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 PDGFAP04085 211 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 DBHP09172 617 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 APEX1P27695 318 aaKnown RBP14.55□□□□□ -0.08
USP4-201ENST00000265560 PCK2Q16822 640 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 ZNF454Q8N9F8 522 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 RNF133Q8WVZ7 376 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 FOXD3Q9UJU5 478 aaPredicted RBP14.55□□□□□ -0.08
USP4-201ENST00000265560 NBEAQ8NFP9 2946 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 ZGRF1Q86YA3 2104 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 F5H5K5 113 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 ARL6IP5O75915 188 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 ADRA2CP18825 462 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 CD53P19397 219 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 ELK1P19419 428 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 TAB1Q15750 504 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 TEX30Q5JUR7 227 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 SCMH1Q96GD3 660 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 OR52A1Q9UKL2 312 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 TRGV5A0A0B4J1U4 118 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 HRGP04196 525 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 THBS2P35442 1172 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 POU4F3Q15319 338 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 BAK1Q16611 211 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 FAM109AQ8N4B1 249 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 OR5M9Q8NGP3 310 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 RPS4Y2Q8TD47 263 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 TMEM54Q969K7 222 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 C12orf49Q9H741 205 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 G6PC2Q9NQR9 355 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 ZNF319Q9P2F9 582 aa14.55□□□□□ -0.08
USP4-201ENST00000265560 INTS1Q8N201 2190 aaKnown RBP14.54□□□□□ -0.08
USP4-201ENST00000265560 KRT33AO76009 404 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 TGM6O95932 706 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 ZNF24P17028 368 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 HSD11B1P28845 292 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 CAPZA2P47755 286 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 CEACAM16Q2WEN9 425 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 TSPO2Q5TGU0 170 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 CATSPERDQ86XM0 798 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 GPR148Q8TDV2 347 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 AP3S1Q92572 193 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 FBXO17Q96EF6 278 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 NOSIPQ9Y314 301 aaKnown RBP14.54□□□□□ -0.08
USP4-201ENST00000265560 TMEM212A6NML5 194 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 E9PLN8 166 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 DLL1O00548 723 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 EIF4EP06730 217 aaKnown RBP14.54□□□□□ -0.08
USP4-201ENST00000265560 GALP22466 123 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 ABLIM2Q6H8Q1 611 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 UNQ9370/PRO34162Q6UXP9 181 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 STAC2Q6ZMT1 411 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 HDDC2Q7Z4H3 204 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 COMMD2Q86X83 199 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 CROCCP3Q8IVE0 287 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 C20orf196Q8IYI0 205 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 GPR137CQ8N3F9 429 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 MEIOBQ8N635 442 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 TCF7L1Q9HCS4 588 aa14.54□□□□□ -0.08
USP4-201ENST00000265560 A0A096LPE4 126 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 A0A1W2PPZ6 126 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 ACOT7O00154 380 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 CYTIPO60759 359 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 EPXP11678 715 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 ENDOGQ14249 297 aaKnown RBP14.53□□□□□ -0.08
USP4-201ENST00000265560 RNASE12Q5GAN4 147 aaKnown RBP14.53□□□□□ -0.08
USP4-201ENST00000265560 MTFR2Q6P444 385 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 CHMP1BQ7LBR1 199 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 LUZP2Q86TE4 346 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 TRMT10AQ8TBZ6 339 aaKnown RBP14.53□□□□□ -0.08
USP4-201ENST00000265560 NABP1Q96AH0 204 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 SF3B5Q9BWJ5 86 aaKnown RBP14.53□□□□□ -0.08
USP4-201ENST00000265560 KCNK15Q9H427 330 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 SIAEQ9HAT2 523 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 R4GMQ9 66 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 MRPL33O75394 65 aaKnown RBP14.53□□□□□ -0.08
USP4-201ENST00000265560 MSR1P21757 451 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 ZNF45Q02386 682 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 ASPHD2Q6ICH7 369 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 SERPINA12Q8IW75 414 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 IZUMO1Q8IYV9 350 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 CENPSQ8N2Z9 138 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 FGFBP3Q8TAT2 258 aa14.53□□□□□ -0.08
USP4-201ENST00000265560 MRPS7Q9Y2R9 242 aaKnown RBP14.53□□□□□ -0.08
USP4-201ENST00000265560 SSX4O60224 188 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 SLC43A1O75387 559 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 SRSF10O75494 262 aaKnown RBP14.52□□□□□ -0.08
USP4-201ENST00000265560 UPK1BO75841 260 aa14.52□□□□□ -0.08
USP4-201ENST00000265560 GATBO75879 557 aaKnown RBP14.52□□□□□ -0.08
USP4-201ENST00000265560 IL18Q14116 193 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms