RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF517Q6ZMY9 492 aaPredicted RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 MOB3CQ70IA8 216 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PARP16Q8N5Y8 322 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 OR51E1Q8TCB6 317 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 LGALS14Q8TCE9 139 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 PAPOLGQ9BWT3 736 aaKnown RBP10.34□□□□□ -0.75
VPS4A-201ENST00000254950 POLE4Q9NR33 117 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 ZNF222Q9UK12 451 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 RCE1Q9Y256 329 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 USP34Q70CQ2 3546 aa10.34□□□□□ -0.75
VPS4A-201ENST00000254950 CCNKO75909 580 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 WNT11O96014 354 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 HTR2CP28335 458 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 NUP62P37198 522 aaPredicted RBP10.33□□□□□ -0.76
VPS4A-201ENST00000254950 MRPS10P82664 201 aaKnown RBP10.33□□□□□ -0.76
VPS4A-201ENST00000254950 RIPPLY1Q0D2K3 151 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 RSPO4Q2I0M5 234 aaPredicted RBP10.33□□□□□ -0.76
VPS4A-201ENST00000254950 RAB12Q6IQ22 244 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 WDSUB1Q8N9V3 476 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 OR6M1Q8NGM8 313 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 RNF128Q8TEB7 428 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 ITFG2Q969R8 447 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 TAS2R8Q9NYW2 309 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 SCP2D1Q9UJQ7 156 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 LHX6Q9UPM6 363 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 RANBP2P49792 3224 aaKnown RBP10.33□□□□□ -0.76
VPS4A-201ENST00000254950 A0A1B0GVC2 190 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 A6NIN4 97 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 ACTBP60709 375 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 ACTG1P63261 375 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF85Q03923 595 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 SLC22A24Q8N4F4 322 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 LIPHQ8WWY8 451 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 C4orf45Q96LM5 186 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 PBOV1Q9GZY1 135 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 FKBP14Q9NWM8 211 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 PLEKHA6Q9Y2H5 1048 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 DENND4AQ7Z401 1863 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 OR6C6A6NF89 314 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 MPZL1O95297 269 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 ARF1P84077 181 aaKnown RBP10.33□□□□□ -0.76
VPS4A-201ENST00000254950 TBC1D28Q2M2D7 210 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 SCGB2B2Q4G0G5 96 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 GFRALQ6UXV0 394 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 GPR84Q9NQS5 396 aa10.33□□□□□ -0.76
VPS4A-201ENST00000254950 hCG_1807616A0A1W2PRN6 198 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 CLPSP04118 112 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 YES1P07947 543 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 IL11P20809 199 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 GALP22466 123 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF684Q5T5D7 378 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF468Q5VIY5 522 aaPredicted RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 MED18Q9BUE0 208 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF71Q9NQZ8 489 aaPredicted RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 NUFIP1Q9UHK0 495 aaKnown RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 CUL9Q8IWT3 2517 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 TFP02787 698 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 MTCP1P56278 107 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF121P58317 390 aaPredicted RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ARPC4P59998 168 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 LINC00114Q6XXX2 140 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 CREB3L2Q70SY1 520 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 GCNT2Q8N0V5 402 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZPLD1Q8TCW7 415 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 CCDC107Q8WV48 283 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 HPS1Q92902 700 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 KCNJ15Q99712 375 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 PDCD10Q9BUL8 212 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 HES7Q9BYE0 225 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 NGBQ9NPG2 151 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 COMMD9Q9P000 198 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 COPS3Q9UNS2 423 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 B3GNT3Q9Y2A9 372 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 DISC1C4P0D8 188 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 RER1O15258 196 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 RAD51DO75771 328 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZFPL1O95159 310 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 IDH3GP51553 393 aaPredicted RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 PSMA6P60900 246 aaKnown RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 DBPQ10586 325 aaPredicted RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF169Q14929 603 aaPredicted RBP10.32□□□□□ -0.76
VPS4A-201ENST00000254950 C3AR1Q16581 482 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ATAD3CQ5T2N8 411 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 FAM27D1Q5T7N8 215 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 SLC16A12Q6ZSM3 486 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 PLPP7Q8NBV4 271 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 OR51T1Q8NGJ9 327 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 AKR7LQ8NHP1 331 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 DOK1Q99704 481 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF416Q9BWM5 594 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 ETV7Q9Y603 341 aa10.32□□□□□ -0.76
VPS4A-201ENST00000254950 HRGP04196 525 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 ZNF93P35789 620 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 CRYBB2P43320 205 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 SELENOPP49908 381 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 RPS4XP62701 263 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 EXOSC6Q5RKV6 272 aaKnown RBP10.31□□□□□ -0.76
VPS4A-201ENST00000254950 GLYATL3Q5SZD4 288 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 LAIR2Q6ISS4 152 aa10.31□□□□□ -0.76
VPS4A-201ENST00000254950 TMEM81Q6P7N7 255 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms