RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OR8U9P0C7N5 309 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 GNALP38405 381 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 MST1LQ2TV78 715 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 HNRNPA1L2Q32P51 320 aaKnown RBP12.93□□□□□ -0.34
SDC1-201ENST00000254351 C1QL3Q5VWW1 255 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 CBLN3Q6UW01 205 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 OR8U1Q8NH10 309 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 MFRPQ9BY79 579 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 SRMSQ9H3Y6 488 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 ASH2LQ9UBL3 628 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 FREM3P0C091 2139 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 CD74P04233 296 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 SMIM6P0DI80 62 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 PSG6Q00889 435 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 ZNF616Q08AN1 781 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 ZNF684Q5T5D7 378 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 OR13C9Q8NGT0 318 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 GAL3ST3Q96A11 431 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 MRGPRFQ96AM1 343 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 PHYHIPLQ96FC7 376 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 C1orf198Q9H425 327 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 MMP26Q9NRE1 261 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 CARHSP1Q9Y2V2 147 aaKnown RBP12.93□□□□□ -0.34
SDC1-201ENST00000254351 KIF26BQ2KJY2 2108 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 TRBV5-5A0A0J9YX44 114 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 NME2P1O60361 137 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 CRHP06850 196 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 ZBTB25P24278 435 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 TSFMP43897 325 aaKnown RBP12.93□□□□□ -0.34
SDC1-201ENST00000254351 DNASE1L1P49184 302 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 ADPRHP54922 357 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 GPR18Q14330 331 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 RCBTB1Q8NDN9 531 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 TMEM104Q8NE00 496 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 RSPH9Q9H1X1 276 aaPredicted RBP12.93□□□□□ -0.34
SDC1-201ENST00000254351 SMCO4Q9NRQ5 59 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 FAM86C1Q9NVL1 165 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 TBC1D29Q9UFV1 150 aa12.93□□□□□ -0.34
SDC1-201ENST00000254351 A0A1W2PPE2 198 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 SLC17A2O00624 439 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 MOSPD3O75425 235 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 FHITP49789 147 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 TMEM225Q6GV28 225 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 PSRC1Q6PGN9 363 aaPredicted RBP12.92□□□□□ -0.34
SDC1-201ENST00000254351 SLC25A43Q8WUT9 341 aaPredicted RBP12.92□□□□□ -0.34
SDC1-201ENST00000254351 PATE1Q8WXA2 126 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 RNF126Q9BV68 326 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 EIF5A2Q9GZV4 153 aaKnown RBP12.92□□□□□ -0.34
SDC1-201ENST00000254351 DUSP22Q9NRW4 184 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 LOC101059948A0A1B0GTJ6 334 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 RDH16O75452 317 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 NUDT14O95848 222 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 ABHD16AO95870 558 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 FAM157CP0CG43 387 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 ACRP10323 421 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 SLC25A4P12235 298 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 RPS4Y1P22090 263 aaKnown RBP12.92□□□□□ -0.34
SDC1-201ENST00000254351 AWAT1Q58HT5 328 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 OR2B11Q5JQS5 317 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 TMEM151BQ8IW70 566 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 WDSUB1Q8N9V3 476 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 OR4D6Q8NGJ1 314 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 ZNF524Q96C55 264 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 KTI12Q96EK9 354 aaPredicted RBP12.92□□□□□ -0.34
SDC1-201ENST00000254351 C4orf45Q96LM5 186 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 RAB33BQ9H082 229 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 IL23AQ9NPF7 189 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 SLC2A4RGQ9NR83 387 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 CKLFQ9UBR5 152 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 LPAR3Q9UBY5 353 aa12.92□□□□□ -0.34
SDC1-201ENST00000254351 HPGDP15428 266 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 CSRP1P21291 193 aaKnown RBP12.91□□□□□ -0.34
SDC1-201ENST00000254351 RPL18Q07020 188 aaKnown RBP12.91□□□□□ -0.34
SDC1-201ENST00000254351 CEBPEQ15744 281 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 PRICKLE4Q2TBC4 344 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 MESTQ5EB52 335 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 TAF8Q7Z7C8 310 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 INTS14Q96SY0 518 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 OR51M1Q9H341 326 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 CYTL1Q9NRR1 136 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 DEC1Q9P2X7 70 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 EMC9Q9Y3B6 208 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 A0A1B0GV90 55 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 TMEM212A6NML5 194 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 H0Y8X5 98 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 SDCBPO00560 298 aaPredicted RBP12.91□□□□□ -0.34
SDC1-201ENST00000254351 FGF16O43320 207 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 HCRTR1O43613 425 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 SCGB1D2O95969 90 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 CISD3P0C7P0 127 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 GLI4P10075 376 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 CD79AP11912 226 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 LINC00346Q8IVM7 164 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 PRR22Q8IZ63 422 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 PAQR4Q8N4S7 273 aaPredicted RBP12.91□□□□□ -0.34
SDC1-201ENST00000254351 TMEM229BQ8NBD8 167 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 DCBLD2Q96PD2 775 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 MRI1Q9BV20 369 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 URGCP-MRPS24S4R325 110 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 MED12Q93074 2177 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms