RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 OR5D16Q8NGK9 328 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 C7orf26Q96N11 449 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NDFIP1Q9BT67 221 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 MMP27Q9H306 513 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 DLL4Q9NR61 685 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLC23A2Q9UGH3 650 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 A0A1W2PQF6 199 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 XPNPEP2O43895 674 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FAM189A1O60320 539 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PIPP12273 146 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 GRPRP30550 384 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 MAGEA5P43359 124 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 CLDN6P56747 220 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RAB4BP61018 213 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLC22A6Q4U2R8 563 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 AMIGO2Q86SJ2 522 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TOMM5Q8N4H5 51 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RELL2Q8NC24 303 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NPEPL1Q8NDH3 523 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 C10orf82Q8WW14 230 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 C12orf43Q96C57 262 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 OR2A14Q96R47 310 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PCGF1Q9BSM1 259 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SFXN3Q9BWM7 321 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SLCO1B3Q9NPD5 702 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HHLA2Q9UM44 414 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 GPR52Q9Y2T5 361 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ADAMTS7Q9UKP4 1686 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TNCP24821 2201 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM269A0A1B0GVZ9 245 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TCRBV7S3A2A0A539 114 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 C17orf112F2Z3M2 114 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SNX3O60493 162 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 S100A8P05109 93 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 STSP08842 583 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ANXA7P20073 488 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TBPP20226 339 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TUBG1P23258 451 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 OR1Q1Q15612 314 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 MPEG1Q2M385 716 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 THEM4Q5T1C6 240 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ZNF584Q8IVC4 421 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 GLB1L2Q8IW92 636 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NRMQ8IXM6 262 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 MTURNQ8N3F0 131 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 OR52H1Q8NGJ2 320 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 EXOGQ9Y2C4 368 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PRSS21Q9Y6M0 314 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 COL11A2P13942 1736 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 CSPG4Q6UVK1 2322 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 IFNL4K9M1U5 179 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SEMA7AO75326 666 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 B3GALNT1O75752 331 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 SC5DO75845 299 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HLA-HP01893 362 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NID1P14543 1247 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 APEX1P27695 318 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 WNT7BP56706 349 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 LSM3P62310 102 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HBG1P69891 147 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HBG2P69892 147 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HSF1Q00613 529 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RNASE12Q5GAN4 147 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 FAM222BQ8WU58 562 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RNASE6Q93091 150 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM203Q969S6 136 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 UTP4Q969X6 686 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 HSH2DQ96JZ2 352 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 UHRF2Q96PU4 802 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 TSNAXQ99598 290 aaKnown RBP4.56□□□□□ -1.68
SCN1A-218ENST00000640036 PIP5K1AQ99755 562 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RASL11BQ9BPW5 248 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 METTL9Q9H1A3 318 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 NOX3Q9HBY0 568 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 THYN1Q9P016 225 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 C15orf41Q9Y2V0 281 aa4.56□□□□□ -1.68
SCN1A-218ENST00000640036 RNASEK-C17orf49H0YIS7 233 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CD68P34810 354 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 CDKN2CP42773 168 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 NDUFA6P56556 154 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 PCBP3P57721 371 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TAS2R46P59540 309 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 RPL23AP62750 156 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TBR1Q16650 682 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 C16orf47Q6ZP98 133 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SLCO4C1Q6ZQN7 724 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 C17orf78Q8N4C9 275 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR10R2Q8NGX6 335 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 OR10D3Q8NH80 312 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TM4SF19Q96DZ7 209 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 ARSGQ96EG1 525 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MRPS24Q96EL2 167 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 GMPPAQ96IJ6 420 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TTTY10Q9BZA0 68 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 TXLNGYQ9BZA5 131 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 RNPEPL1Q9HAU8 725 aa4.55□□□□□ -1.68
SCN1A-218ENST00000640036 SIDT1Q9NXL6 827 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MYEF2Q9P2K5 600 aaKnown RBP4.55□□□□□ -1.68
SCN1A-218ENST00000640036 MN1Q10571 1320 aaPredicted RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms