RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FGFR1OPO95684 399 aaKnown RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 TRBC1P01850 177 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 IGHG4P01861 327 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 ALDOBP05062 364 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 S100A6P06703 90 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 LINC00869P0C866 280 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 ZNF3P17036 446 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 PSMC3P17980 439 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 PCMT1P22061 227 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CPN2P22792 545 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 RRM2P31350 389 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 OTX1P32242 354 aaPredicted RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 DDOSTP39656 456 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 RFX3P48380 749 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 TPMTP51580 245 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 BLVRAP53004 296 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CRYBB1P53674 252 aaPredicted RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 CLDN8P56748 225 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 YWHAEP62258 255 aaKnown RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 RAB11AP62491 216 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 BST2Q10589 180 aaKnown RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 PDIA2Q13087 525 aaKnown RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 PPIL2Q13356 520 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 VGLL4Q14135 290 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CYTH1Q15438 398 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 TGFBIQ15582 683 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 RAB11BQ15907 218 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 SGCAQ16586 387 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 ZBED5Q49AG3 693 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 SFT2D3Q587I9 215 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 AP1ARQ63HQ0 302 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 OR2A2Q6IF42 318 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 C1orf94Q6P1W5 598 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 TMEM53Q6P2H8 277 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 LRRC74BQ6ZQY2 392 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 H2AFVQ71UI9 128 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 PEX26Q7Z412 305 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 FAM58AQ8N1B3 248 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 GABRG1Q8N1C3 465 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CSGALNACT2Q8N6G5 542 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 MFSD9Q8NBP5 474 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 FAM83FQ8NEG4 500 aaPredicted RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 OR1L4Q8NGR5 311 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CLHC1Q8NHS4 586 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 DDI1Q8WTU0 396 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 GLYATL2Q8WU03 294 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CCDC12Q8WUD4 166 aaPredicted RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 SCFD1Q8WVM8 642 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 ASZ1Q8WWH4 475 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 ITFG2Q969R8 447 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 KIAA1143Q96AT1 154 aaPredicted RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 C10orf35Q96D05 121 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 ITCHQ96J02 903 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CATSPER2Q96P56 530 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 TRNT1Q96Q11 434 aaKnown RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 PANX1Q96RD7 426 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 RIOK2Q9BVS4 552 aaKnown RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 MRPL37Q9BZE1 423 aaKnown RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 ILKAPQ9H0C8 392 aaPredicted RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 CYP3A43Q9HB55 503 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 PARVGQ9HBI0 331 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 RAB18Q9NP72 206 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 CCNB1IP1Q9NPC3 277 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 SLCO1B3Q9NPD5 702 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 ZNF355PQ9NSJ1 428 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 GIN1Q9NXP7 522 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 PDP1Q9P0J1 537 aaPredicted RBP1.66□□□□□ -2.14
CD44-239ENST00000639002 POLDIP2Q9Y2S7 368 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 AKNAQ7Z591 1439 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 KIF27Q86VH2 1401 aa1.66□□□□□ -2.14
CD44-239ENST00000639002 USP9XQ93008 2570 aaPredicted RBP1.65□□□□□ -2.14
CD44-239ENST00000639002 DOCK8Q8NF50 2099 aa1.65□□□□□ -2.14
CD44-239ENST00000639002 TRAV25A0A0B4J276 109 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 TRBV11-1A0A0K0K1C0 115 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 A0A1W2PPV4 95 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 PRSS37A4D1T9 235 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 RBMY1BA6NDE4 496 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 RBMY1EA6NEQ0 496 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 SMCO2A6NFE2 343 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 FOXE1O00358 373 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 RRP8O43159 456 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 UPK3AO75631 287 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CRTAPO75718 401 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 SRP72O76094 671 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 TGM6O95932 706 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CRYGCP07315 174 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ERCC1P07992 297 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 RBMY1DP0C7P1 496 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 UBTFL1P0CB47 393 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 RBMY1A1P0DJD3 496 aaKnown RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 CALM1P0DP23 149 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CALM2P0DP24 149 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CALM3P0DP25 149 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 NCK1P16333 377 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 ZNF30P17039 623 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 TCN1P20061 433 aaPredicted RBP1.65□□□□□ -2.15
CD44-239ENST00000639002 CNR1P21554 472 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CCNOP22674 350 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 CD1CP29017 333 aa1.65□□□□□ -2.15
CD44-239ENST00000639002 GTF2E2P29084 291 aaKnown RBP1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms