RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 NSUN5P2Q63ZY6 315 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 FDX2Q6P4F2 183 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 CFAP77Q6ZQR2 320 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 SPATC1Q76KD6 591 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 RHOUQ7L0Q8 258 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 CISD2Q8N5K1 135 aaKnown RBP16.22■□□□□ 0.19
CLN3-254ENST00000637050 KDF1Q8NAX2 398 aaPredicted RBP16.22■□□□□ 0.19
CLN3-254ENST00000637050 OR10S1Q8NGN2 331 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 GHSRQ92847 366 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 SLAMF6Q96DU3 332 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 RNF167Q9H6Y7 350 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 SIAEQ9HAT2 523 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 LRP12Q9Y561 859 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 CACNA1GO43497 2377 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 NCOR2Q9Y618 2525 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 TRBV2A0A0J9YWF9 115 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 CD8B2A6NJW9 211 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 KRT33AO76009 404 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 IGHV3-9P01782 118 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 ZNF182P17025 639 aaPredicted RBP16.21■□□□□ 0.19
CLN3-254ENST00000637050 OPRL1P41146 370 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 GDI2P50395 445 aaKnown RBP16.21■□□□□ 0.19
CLN3-254ENST00000637050 RIDAP52758 137 aaKnown RBP16.21■□□□□ 0.19
CLN3-254ENST00000637050 SF3B4Q15427 424 aaKnown RBP eCLIP16.21■□□□□ 0.192e-7■■■■□ 24.8
CLN3-254ENST00000637050 TRAM1Q15629 374 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 ZNF100Q8IYN0 542 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 HSD17B8Q92506 261 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 FOXB1Q99853 325 aa16.21■□□□□ 0.19
CLN3-254ENST00000637050 TXNL4BQ9NX01 149 aaKnown RBP16.21■□□□□ 0.19
CLN3-254ENST00000637050 HIST1H3AP68431 136 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 ALKBH1Q13686 389 aaKnown RBP16.21■□□□□ 0.18
CLN3-254ENST00000637050 NRN1LQ496H8 165 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 HIST2H3PS2Q5TEC6 136 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 OR7E24Q6IFN5 339 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 ZNF585AQ6P3V2 769 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 TMEM91Q6ZNR0 172 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 USP43Q70EL4 1123 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 HIST2H3AQ71DI3 136 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 MS4A15Q8N5U1 240 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 KBTBD8Q8NFY9 601 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 DCLRE1CQ96SD1 692 aaKnown RBP16.21■□□□□ 0.18
CLN3-254ENST00000637050 HDHD5Q9BXW7 423 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 DCSTAMPQ9H295 470 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 FRRS1LQ9P0K9 344 aa16.21■□□□□ 0.18
CLN3-254ENST00000637050 PHF3Q92576 2039 aaKnown RBP16.2■□□□□ 0.18
CLN3-254ENST00000637050 ZNF587BE7ETH6 402 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 GABRPO00591 440 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 RER1O15258 196 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 GPRIN2O60269 458 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 WDR1O75083 606 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 SRSF10O75494 262 aaKnown RBP16.2■□□□□ 0.18
CLN3-254ENST00000637050 GABRA1P14867 456 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 OR3A2P47893 321 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 TEX19Q8NA77 164 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 C9orf106Q8NAJ2 232 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 OR2G2Q8NGZ5 317 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 DYNC2LI1Q8TCX1 351 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 SLX1AQ9BQ83 275 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 PNRC2Q9NPJ4 139 aaKnown RBP16.2■□□□□ 0.18
CLN3-254ENST00000637050 CENPMQ9NSP4 180 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 UPB1Q9UBR1 384 aa16.2■□□□□ 0.18
CLN3-254ENST00000637050 ZNF878C9JN71 531 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 SC5DO75845 299 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 RGS9O75916 674 aaPredicted RBP16.19■□□□□ 0.18
CLN3-254ENST00000637050 CST2P09228 141 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 H2BFMP0C1H6 154 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 DCTDP32321 178 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 PTGER4P35408 488 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 TUBA1BP68363 451 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 C22orf42Q6IC83 251 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 OR2A2Q6IF42 318 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 TUBA1AQ71U36 451 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 FAM214BQ7L5A3 538 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 ZNF627Q7L945 461 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 LRRC18Q8N456 261 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 SLC22A24Q8N4F4 322 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 GJC3Q8NFK1 279 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 ABHD4Q8TB40 342 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 FAM57AQ8TBR7 257 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 SNRNP40Q96DI7 357 aaKnown RBP16.19■□□□□ 0.18
CLN3-254ENST00000637050 FBXO17Q96EF6 278 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 PDCD1LG2Q9BQ51 273 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 C12orf49Q9H741 205 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 MALT1Q9UDY8 824 aa16.19■□□□□ 0.18
CLN3-254ENST00000637050 MBD3L4A6NDZ8 208 aaPredicted RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 MBD3L3A6NE82 208 aaPredicted RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 MBD3L5A6NJ08 208 aaPredicted RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 OR4C45A6NMZ5 311 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 ZFPL1O95159 310 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 PNPP00491 289 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 TPOP07202 933 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 B4GALT1P15291 398 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 CCR9P51686 369 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 RPS11P62280 158 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLN3-254ENST00000637050 INSL4Q14641 139 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 RTL6Q6ICC9 239 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.18■□□□□ 0.18
CLN3-254ENST00000637050 GCNT2Q8N0V5 402 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 PRSS35Q8N3Z0 413 aa16.18■□□□□ 0.18
CLN3-254ENST00000637050 MBD3L2Q8NHZ7 208 aaPredicted RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms