RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 AGFG1P52594 562 aaKnown RBP13.93□□□□□ -0.18
CLN3-251ENST00000636853 PITPNAQ00169 270 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SSPNQ14714 243 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 TOMM20Q15388 145 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SLC36A2Q495M3 483 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SMUG1Q53HV7 270 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 THEM4Q5T1C6 240 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 NOXO1Q8NFA2 376 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 OR10H5Q8NGA6 315 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SUN5Q8TC36 379 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 UBASH3BQ8TF42 649 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 MARVELD3Q96A59 401 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 NTNG2Q96CW9 530 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 DMRTB1Q96MA1 342 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 ZPBPQ9BS86 351 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SEC61A2Q9H9S3 476 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 R4GMQ9 66 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 PHF3Q92576 2039 aaKnown RBP13.93□□□□□ -0.18
CLN3-251ENST00000636853 IGHV3-15A0A0B4J1V0 119 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 OR2M5A3KFT3 312 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 AQP7P3A6NL99 342 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 CD63P08962 238 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 CDAP32320 146 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 MMP15P51511 669 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SLC35A1P78382 337 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 ASPHD2Q6ICH7 369 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 ZNF767PQ75MW2 155 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 DND1Q8IYX4 353 aaKnown RBP13.93□□□□□ -0.18
CLN3-251ENST00000636853 ARMC10Q8N2F6 343 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 SYNPRQ8TBG9 265 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 GCDHQ92947 438 aaPredicted RBP13.93□□□□□ -0.18
CLN3-251ENST00000636853 NKX3-1Q99801 234 aaPredicted RBP13.93□□□□□ -0.18
CLN3-251ENST00000636853 STMN3Q9NZ72 180 aa13.93□□□□□ -0.18
CLN3-251ENST00000636853 LOC101059948A0A1B0GTJ6 334 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 HRGP04196 525 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 LAP3P28838 519 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 RPS15P62841 145 aaKnown RBP13.92□□□□□ -0.18
CLN3-251ENST00000636853 UTS2BQ765I0 119 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 ESX1Q8N693 406 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 ASB5Q8WWX0 329 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 SLC39A7Q92504 469 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 CMTM3Q96MX0 182 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 DDA1Q9BW61 102 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 SPRY4Q9C004 299 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 IRF2BPLQ9H1B7 796 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 AUNIPQ9H7T9 357 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 RANGRFQ9HD47 186 aaPredicted RBP13.92□□□□□ -0.18
CLN3-251ENST00000636853 EMC7Q9NPA0 242 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 PLSCR3Q9NRY6 295 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 P4HTMQ9NXG6 502 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 DHDHQ9UQ10 334 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 CACNG2Q9Y698 323 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 TMEM269A0A1B0GVZ9 245 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 ERVH48-1M5A8F1 160 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 HPP00738 406 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 RAB40ALP0C0E4 278 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 H2BFMP0C1H6 154 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 CALCBP10092 127 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 ICAM2P13598 275 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 FKBP2P26885 142 aaKnown RBP13.92□□□□□ -0.18
CLN3-251ENST00000636853 GZMKP49863 264 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 CLDN20P56880 219 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 FAPQ12884 760 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 PLA2G7Q13093 441 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 TATDN3Q17R31 274 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 Q5BKY6 102 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 LINGO2Q7L985 606 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.92□□□□□ -0.18
CLN3-251ENST00000636853 OR6X1Q8NH79 312 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 G6PC2Q9NQR9 355 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 NUFIP1Q9UHK0 495 aaKnown RBP13.92□□□□□ -0.18
CLN3-251ENST00000636853 CYB5R1Q9UHQ9 305 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 OR52A1Q9UKL2 312 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 BOLA1Q9Y3E2 137 aa13.92□□□□□ -0.18
CLN3-251ENST00000636853 ZNF726A6NNF4 738 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 PMS2P2O95744 297 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 F10P00742 488 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 CLDN17P56750 224 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 RAB25P57735 213 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 CHAF1BQ13112 559 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 ZNF239Q16600 458 aaKnown RBP13.91□□□□□ -0.18
CLN3-251ENST00000636853 TOMM5Q8N4H5 51 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 RNF133Q8WVZ7 376 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 DOCK10Q96BY6 2186 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 SLAMF6Q96DU3 332 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 SGCZQ96LD1 299 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 NCKAP5O14513 1909 aa13.91□□□□□ -0.18
CLN3-251ENST00000636853 ZNF780AO75290 641 aaPredicted RBP13.9□□□□□ -0.18
CLN3-251ENST00000636853 C1QBP02746 253 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 P04436 131 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 TMIGD3P0DMS9 266 aaPredicted RBP13.9□□□□□ -0.18
CLN3-251ENST00000636853 SLC6A1P30531 599 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 BTCP35070 178 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 BAIAP2L2Q6UXY1 529 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 CREB3L2Q70SY1 520 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 SIAH3Q8IW03 269 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 LIN37Q96GY3 246 aaPredicted RBP13.9□□□□□ -0.18
CLN3-251ENST00000636853 TMEM41AQ96HV5 264 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 UCN2Q96RP3 112 aa13.9□□□□□ -0.18
CLN3-251ENST00000636853 DHRS9Q9BPW9 319 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms