RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 SCRN3Q0VDG4 424 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 DBPQ10586 325 aaPredicted RBP15.69■□□□□ 0.1
CLN3-243ENST00000635973 DAG1Q14118 895 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 ENDOGQ14249 297 aaKnown RBP15.69■□□□□ 0.1
CLN3-243ENST00000635973 PABPC1L2AQ5JQF8 200 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 OTPQ5XKR4 325 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 UGT2A3Q6UWM9 527 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 ZBTB46Q86UZ6 589 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 IL17RDQ8NFM7 739 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 C11orf40Q8WZ69 217 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 TRAF4Q9BUZ4 470 aaPredicted RBP15.69■□□□□ 0.1
CLN3-243ENST00000635973 C1orf198Q9H425 327 aa15.69■□□□□ 0.1
CLN3-243ENST00000635973 IGHV2OR16-5A0A0B4J2B6 119 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 FAM183AA6NL82 134 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 SURF4O15260 269 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 SCG5P05408 212 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 GYPBP06028 91 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 MMP7P09237 267 aaPredicted RBP15.68■□□□□ 0.1
CLN3-243ENST00000635973 GAAP10253 952 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 CALCRP30988 508 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 APLNRP35414 380 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 SLC25A1P53007 311 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 LSM6P62312 80 aaKnown RBP15.68■□□□□ 0.1
CLN3-243ENST00000635973 AQP6Q13520 282 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 PTGES3Q15185 160 aaKnown RBP15.68■□□□□ 0.1
CLN3-243ENST00000635973 RCN1Q15293 331 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 SNAPC1Q16533 368 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 MEP1BQ16820 701 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 TBC1D28Q2M2D7 210 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 ZNF362Q5T0B9 420 aaPredicted RBP15.68■□□□□ 0.1
CLN3-243ENST00000635973 FBXL14Q8N1E6 418 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 CBR4Q8N4T8 237 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 SLC30A7Q8NEW0 376 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 OR51L1Q8NGJ5 315 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 OR6K6Q8NGW6 343 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 AKR7LQ8NHP1 331 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 EME1Q96AY2 570 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 REG4Q9BYZ8 158 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 OR2H1Q9GZK4 316 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 CDH20Q9HBT6 801 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 TVP23BQ9NYZ1 205 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 TIMM10BQ9Y5J6 103 aa15.68■□□□□ 0.1
CLN3-243ENST00000635973 HIVEP2P31629 2446 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 PRR23D1E9PI22 279 aaPredicted RBP15.67■□□□□ 0.1
CLN3-243ENST00000635973 PRR23D2P0DMB1 279 aaPredicted RBP15.67■□□□□ 0.1
CLN3-243ENST00000635973 ZNF823P16415 610 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 SPI1P17947 270 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 ALDH3A2P51648 485 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 TEKQ02763 1124 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 PLBD1Q6P4A8 553 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 VHLLQ6RSH7 139 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 B3GLCTQ6Y288 498 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 SYT9Q86SS6 491 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 ZNF584Q8IVC4 421 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 ALDH16A1Q8IZ83 802 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 MAPK1IP1LQ8NDC0 245 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 SLC26A10Q8NG04 563 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 OR4F15Q8NGB8 312 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 OR1J2Q8NGS2 313 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 ZNF75AQ96N20 296 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 DDOQ99489 341 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 DHRS9Q9BPW9 319 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 WACQ9BTA9 647 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 CDADC1Q9BWV3 514 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 GRIP2Q9C0E4 1043 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 OR51V1Q9H2C8 321 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 MED20Q9H944 212 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 ASH2LQ9UBL3 628 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 TMEFF2Q9UIK5 374 aaPredicted RBP15.67■□□□□ 0.1
CLN3-243ENST00000635973 SPEF1Q9Y4P9 236 aa15.67■□□□□ 0.1
CLN3-243ENST00000635973 FN1P02751 2386 aaKnown RBP15.67■□□□□ 0.1
CLN3-243ENST00000635973 E7EQL1 145 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 SSX4O60224 188 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 DOK2O60496 412 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 CD8AP01732 235 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 IGHV4-39P01824 125 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 ALPLP05186 524 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 CLUP10909 449 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 BMP4P12644 408 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 CCNOP22674 350 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 TTKP33981 857 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 FABP6P51161 128 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 RAD23AP54725 363 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 PSG4Q00888 419 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 SNTB2Q13425 540 aaKnown RBP15.66■□□□□ 0.1
CLN3-243ENST00000635973 KCNMB1Q16558 191 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 KLHL12Q53G59 568 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 KRT80Q6KB66 452 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 ZBTB49Q6ZSB9 765 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 DTX2Q86UW9 622 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 RHNO1Q9BSD3 238 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 GABARAPL3Q9BY60 117 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 NMNAT2Q9BZQ4 307 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 CBLN4Q9NTU7 201 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 PLEK2Q9NYT0 353 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 USE1Q9NZ43 259 aa15.66■□□□□ 0.1
CLN3-243ENST00000635973 GDF2Q9UK05 429 aaPredicted RBP15.66■□□□□ 0.1
CLN3-243ENST00000635973 TVP23AA6NH52 213 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 ZAR1LA6NP61 321 aa15.65■□□□□ 0.1
CLN3-243ENST00000635973 SGCEO43556 437 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms