RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SLC26A10Q8NG04 563 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 OR4F15Q8NGB8 312 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 OR1J2Q8NGS2 313 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 LILRB1Q8NHL6 650 aaPredicted RBP15.67■□□□□ 0.1
CLN3-239ENST00000628023 ZNF75AQ96N20 296 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 DDOQ99489 341 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 WACQ9BTA9 647 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 CDADC1Q9BWV3 514 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 OR51V1Q9H2C8 321 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 MED20Q9H944 212 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 ASH2LQ9UBL3 628 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 TMEFF2Q9UIK5 374 aaPredicted RBP15.67■□□□□ 0.1
CLN3-239ENST00000628023 SPEF1Q9Y4P9 236 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 E7EQL1 145 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 DOK2O60496 412 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 ALPLP05186 524 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 CLUP10909 449 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 CCNOP22674 350 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 RAD23AP54725 363 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 PSG4Q00888 419 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 SNTB2Q13425 540 aaKnown RBP15.66■□□□□ 0.1
CLN3-239ENST00000628023 KCNMB1Q16558 191 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 KLHL12Q53G59 568 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 KRT80Q6KB66 452 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 ZBTB49Q6ZSB9 765 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 LRRC75A-AS1Q8N1F1 130 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 ZNF611Q8N823 705 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 SMAP2Q8WU79 429 aaPredicted RBP15.66■□□□□ 0.1
CLN3-239ENST00000628023 DHRS9Q9BPW9 319 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 GABARAPL3Q9BY60 117 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 NMNAT2Q9BZQ4 307 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 PLEK2Q9NYT0 353 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 USE1Q9NZ43 259 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 ARID1AO14497 2285 aa15.66■□□□□ 0.1
CLN3-239ENST00000628023 TVP23AA6NH52 213 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 ZAR1LA6NP61 321 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 SGCEO43556 437 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 TFP02787 698 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 CCL2P13500 99 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 STOMP27105 288 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 APEX1P27695 318 aaKnown RBP15.65■□□□□ 0.1
CLN3-239ENST00000628023 EPHA2P29317 976 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 FMO3P31513 532 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 GDI2P50395 445 aaKnown RBP15.65■□□□□ 0.1
CLN3-239ENST00000628023 FABP6P51161 128 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 BLVRAP53004 296 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 TRIP10Q15642 601 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 SLX4IPQ5VYV7 408 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 ZNF774Q6NX45 483 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 CXXC5Q7LFL8 322 aaKnown RBP15.65■□□□□ 0.1
CLN3-239ENST00000628023 FBXL14Q8N1E6 418 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 OR2AJ1Q8NGZ0 328 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 WNT5BQ9H1J7 359 aa15.65■□□□□ 0.1
CLN3-239ENST00000628023 ZNF469Q96JG9 3925 aaPredicted RBP15.65■□□□□ 0.1
CLN3-239ENST00000628023 ANPEPP15144 967 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 HTR5AP47898 357 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 RPS7P62081 194 aaKnown RBP15.64■□□□□ 0.09
CLN3-239ENST00000628023 ELF3P78545 371 aaPredicted RBP15.64■□□□□ 0.09
CLN3-239ENST00000628023 Q5PR19 223 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 ZNF544Q6NX49 715 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 CLEC9AQ6UXN8 241 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 ZNF771Q7L3S4 317 aaPredicted RBP15.64■□□□□ 0.09
CLN3-239ENST00000628023 CPOQ8IVL8 374 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 LINC00346Q8IVM7 164 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 CPEB3Q8NE35 698 aaKnown RBP15.64■□□□□ 0.09
CLN3-239ENST00000628023 NUP37Q8NFH4 326 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 GJC3Q8NFK1 279 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 TMEM171Q8WVE6 324 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 HCAR1Q9BXC0 346 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 OR51B6Q9H340 312 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 HINT3Q9NQE9 182 aaKnown RBP15.64■□□□□ 0.09
CLN3-239ENST00000628023 CA10Q9NS85 328 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 MRPL22Q9NWU5 206 aaKnown RBP15.64■□□□□ 0.09
CLN3-239ENST00000628023 PLCE1Q9P212 2302 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 KCNG2Q9UJ96 466 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 NDRG4Q9ULP0 352 aaKnown RBP15.64■□□□□ 0.09
CLN3-239ENST00000628023 LAMP3Q9UQV4 416 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 LHFPL6Q9Y693 200 aa15.64■□□□□ 0.09
CLN3-239ENST00000628023 ABCA2Q9BZC7 2435 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 C5orf49A4QMS7 147 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 VSTM5A8MXK1 200 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 H0YHG0 523 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 M0R129 80 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 RER1O15258 196 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 GLCEO94923 617 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 SPARCP09486 303 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 ZNF35P13682 527 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 GSTT1P30711 240 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 HGFACQ04756 655 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 RAB35Q15286 201 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 ZIK1Q3SY52 487 aaPredicted RBP15.63■□□□□ 0.09
CLN3-239ENST00000628023 AGAP6Q5VW22 663 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 C12orf73Q69YU5 71 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 TMEM154Q6P9G4 183 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 CORO6Q6QEF8 472 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 LYPD4Q6UWN0 246 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 PRSS57Q6UWY2 283 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 MUC15Q8N387 334 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 ZNRF4Q8WWF5 429 aa15.63■□□□□ 0.09
CLN3-239ENST00000628023 GRIP2Q9C0E4 1043 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms