RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TRAPPC2P0DI81 140 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 TRAPPC2BP0DI82 140 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 COX6A1P12074 109 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 NAGAP17050 411 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 ROM1Q03395 351 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 C2orf76Q3KRA6 126 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 CATSPERDQ86XM0 798 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 SLC38A6Q8IZM9 456 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 TMEM105Q8N8V8 129 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 FCAMRQ8WWV6 532 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 SLC25A44Q96H78 314 aaPredicted RBP9.47□□□□□ -0.89
CUX1-221ENST00000622516 MRGPRX4Q96LA9 322 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 MED28Q9H204 178 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 HRASLSQ9HDD0 168 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 ALKBH4Q9NXW9 302 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 CENPBD1B2RD01 187 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 DHFRP00374 187 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 HPXP02790 462 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 CCR9P51686 369 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 CLRN1P58418 232 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 ZFP36L1Q07352 338 aaKnown RBP9.47□□□□□ -0.89
CUX1-221ENST00000622516 GLYATL3Q5SZD4 288 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 C3orf33Q6P1S2 294 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 ZNF227Q86WZ6 799 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 UEVLDQ8IX04 471 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 OR11G2Q8NGC1 345 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 OR11H7Q8NGC8 314 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 OR1J4Q8NGS1 313 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 OR13C3Q8NGS6 347 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 SNX18Q96RF0 628 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 SOX7Q9BT81 388 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 ING3Q9NXR8 418 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 KLHL9Q9P2J3 617 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 STEAP1Q9UHE8 339 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 ELF5Q9UKW6 265 aaPredicted RBP9.47□□□□□ -0.89
CUX1-221ENST00000622516 B3GALT5Q9Y2C3 310 aa9.47□□□□□ -0.89
CUX1-221ENST00000622516 LOC107986453A0A1B0GWG9 222 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 A6NIZ1 184 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 KRT33AO76009 404 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 DKK1O94907 266 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 CER1O95813 267 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 CRYZL1O95825 349 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 YES1P07947 543 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 H2BFMP0C1H6 154 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 OTX2P32243 289 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 PRKXP51817 358 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 SUMO3P55854 103 aaPredicted RBP9.46□□□□□ -0.89
CUX1-221ENST00000622516 RAP1BP61224 184 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 RAP1AP62834 184 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 ZP4Q12836 540 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 CDK10Q15131 360 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 ST3GAL2Q16842 350 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 B3GNTL1Q67FW5 361 aaPredicted RBP9.46□□□□□ -0.89
CUX1-221ENST00000622516 C5orf46Q6UWT4 87 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 CFAP77Q6ZQR2 320 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 JAGN1Q8N5M9 183 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 TMEM156Q8N614 296 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 RHBDD1Q8TEB9 315 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 IMMP1LQ96LU5 166 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 RBP7Q96R05 134 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 ARRDC1-AS1Q9H2J1 176 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 C12orf4Q9NQ89 552 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 G6PC2Q9NQR9 355 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 OR52A1Q9UKL2 312 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 POLR1DQ9Y2S0 133 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 MRPS18BQ9Y676 258 aaKnown RBP9.46□□□□□ -0.89
CUX1-221ENST00000622516 BOD1L1Q8NFC6 3051 aa9.46□□□□□ -0.89
CUX1-221ENST00000622516 MYO7BQ6PIF6 2116 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 TRAV18A0A075B6X5 111 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 A0A1W2PQ72 361 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 C9J4A7 227 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 GABARAPH6UMI1 98 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 SULT2B1O00204 365 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 RGS13O14921 159 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 FABP7O15540 132 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 RAF1P04049 648 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 H2AFB2P0C5Z0 115 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 PTGS2P35354 604 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 VEGFCP49767 419 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 BLVRAP53004 296 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 FAPQ12884 760 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 MFSD13AQ14CX5 517 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 RSPO4Q2I0M5 234 aaPredicted RBP9.46□□□□□ -0.9
CUX1-221ENST00000622516 GFOD2Q3B7J2 385 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 RAET1LQ5VY80 246 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 OR10H5Q8NGA6 315 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 OR4D10Q8NGI6 311 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 OR8S1Q8NH09 359 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 NKD1Q969G9 470 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 FAM3DQ96BQ1 224 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 SLAMF6Q96DU3 332 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 GHITMQ9H3K2 345 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 PTGES2Q9H7Z7 377 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 R4GMQ9 66 aa9.46□□□□□ -0.9
CUX1-221ENST00000622516 SPENQ96T58 3664 aaKnown RBP9.46□□□□□ -0.9
CUX1-221ENST00000622516 NSG1A0A0A6YYJ2 146 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 ZNF432O94892 652 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 CALCBP10092 127 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 DNASE1L1P49184 302 aa9.45□□□□□ -0.9
CUX1-221ENST00000622516 P2RY4P51582 365 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms