RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ADAM8P78325 824 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 PSG4Q00888 419 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 MAD2L1BPQ15013 274 aaPredicted RBP17.14■□□□□ 0.33
UPF3A-211ENST00000618700 SNCBQ16143 134 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 HIST2H3PS2Q5TEC6 136 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 MEDAGQ5VYS4 303 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 HIST2H2BCQ6DN03 193 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 SLC18B1Q6NT16 456 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 HIST2H3AQ71DI3 136 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 MYPOPQ86VE0 399 aaPredicted RBP17.14■□□□□ 0.33
UPF3A-211ENST00000618700 ZNF584Q8IVC4 421 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 SETD9Q8NE22 299 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 APH1BQ8WW43 257 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 INTS14Q96SY0 518 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 OR2H1Q9GZK4 316 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 RNF121Q9H920 327 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 HAO2Q9NYQ3 351 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 AASSQ9UDR5 926 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 FBXL3Q9UKT7 428 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 TIMM10BQ9Y5J6 103 aa17.14■□□□□ 0.33
UPF3A-211ENST00000618700 DPRXA6NFQ7 191 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 M0R1B8 84 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 ENTPD6O75354 484 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 CELA3BP08861 270 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 ZNF823P16415 610 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 RPS27P42677 84 aaKnown RBP17.13■□□□□ 0.33
UPF3A-211ENST00000618700 IDH3GP51553 393 aaPredicted RBP17.13■□□□□ 0.33
UPF3A-211ENST00000618700 ISL1P61371 349 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 IL5RAQ01344 420 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 SCRN3Q0VDG4 424 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 PABPC1L2AQ5JQF8 200 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 NCMAPQ5T1S8 102 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 CORO6Q6QEF8 472 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 LIAT1Q6ZQX7 453 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 ERI1Q8IV48 349 aaKnown RBP17.13■□□□□ 0.33
UPF3A-211ENST00000618700 OR6N2Q8NGY6 317 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 RFKQ969G6 155 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 H2AFY2Q9P0M6 372 aaPredicted RBP17.13■□□□□ 0.33
UPF3A-211ENST00000618700 WARS2Q9UGM6 360 aaKnown RBP17.13■□□□□ 0.33
UPF3A-211ENST00000618700 HSPE1-MOB4S4R3N1 261 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 DCHS2Q6V1P9 2916 aa17.13■□□□□ 0.33
UPF3A-211ENST00000618700 FAM221AA4D161 298 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 A6NNC1 897 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 RER1O15258 196 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 SELENOFO60613 162 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 WBP4O75554 376 aaKnown RBP17.12■□□□□ 0.33
UPF3A-211ENST00000618700 SERPINA5P05154 406 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 CECR9P0C854 216 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 CD40P25942 277 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 NR1H2P55055 460 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 BSPH1Q075Z2 132 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 TMED1Q13445 227 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 RAB39AQ14964 217 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 TMEM108Q6UXF1 575 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 CFAP77Q6ZQR2 320 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 LINC00346Q8IVM7 164 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 C8orf59Q8N0T1 100 aaPredicted RBP17.12■□□□□ 0.33
UPF3A-211ENST00000618700 FBLIM1Q8WUP2 373 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 PLPPR2Q96GM1 343 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 GDF2Q9UK05 429 aaPredicted RBP17.12■□□□□ 0.33
UPF3A-211ENST00000618700 CRYBG3Q68DQ2 2970 aa17.12■□□□□ 0.33
UPF3A-211ENST00000618700 HRNRQ86YZ3 2850 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 CYSRT1A8MQ03 144 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 ZNF593O00488 134 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 SGCEO43556 437 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 SPARCP09486 303 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 PTAFRP25105 342 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 NAA10P41227 235 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 CCDC92Q53HC0 331 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 ZNF774Q6NX45 483 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 VASH1Q7L8A9 365 aaPredicted RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 SLC16A9Q7RTY1 509 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 CPEB3Q8NE35 698 aaKnown RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 GJC3Q8NFK1 279 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 AKR7LQ8NHP1 331 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 Q96MT0 163 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 CNN2Q99439 309 aaKnown RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 CDADC1Q9BWV3 514 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 ANKRD60Q9BZ19 345 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 C1orf198Q9H425 327 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 ESRP2Q9H6T0 727 aaKnown RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 PNRC2Q9NPJ4 139 aaKnown RBP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 CLN6Q9NWW5 311 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 ATPIF1Q9UII2 106 aa17.11■□□□□ 0.33
UPF3A-211ENST00000618700 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.11■□□□□ 0.33
UPF3A-211ENST00000618700 OR6C6A6NF89 314 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 DOK2O60496 412 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 TMCC2O75069 709 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 COX5BP10606 129 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 NAAAQ02083 359 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 PLP2Q04941 152 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 POU4F2Q12837 409 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 RAB35Q15286 201 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 SHFQ7M4L6 423 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 DPY19L4Q7Z388 723 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 ZNF295-AS1Q8N0V1 137 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 OR10S1Q8NGN2 331 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 OR2AJ1Q8NGZ0 328 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 CNIH3Q8TBE1 160 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 ST7LQ8TDW4 575 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms