RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 VSIG10L2P0DP72 767 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 RPS15P62841 145 aaKnown RBP13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 FMODQ06828 376 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 YOD1Q5VVQ6 348 aaPredicted RBP13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 ARHGEF39Q8N4T4 335 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF721Q8TF20 911 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 NKD1Q969G9 470 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 A0A1B0GX78 115 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 TO15178 435 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 RAG2P55895 527 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 ACSM1Q08AH1 577 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 FHL1Q13642 323 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF141Q15928 474 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF74Q16587 644 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 SEZ6L2Q6UXD5 910 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 MRGPREQ86SM8 312 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 C1orf210Q8IVY1 113 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 CCDC74BQ96LY2 380 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 SLC46A1Q96NT5 459 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 C7orf50Q9BRJ6 194 aaKnown RBP13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 WWTR1Q9GZV5 400 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 DNTTIP1Q9H147 329 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 MMP25Q9NPA2 562 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 MOKQ9UQ07 419 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 SLC22A13Q9Y226 551 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 SGCEO43556 437 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 ZFPL1O95159 310 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 CCL4P13236 92 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 MEOX2P50222 304 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 SKP2Q13309 424 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 GUCA2BQ16661 112 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 TMEM44Q2T9K0 475 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 FAM69AQ5T7M9 428 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF75AQ96N20 296 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 OPN4Q9UHM6 478 aa13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 PURGQ9UJV8 347 aaKnown RBP13.03□□□□□ -0.32
SHROOM1-208ENST00000617339 AHSA1O95433 338 aa13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 SERPINA3P01011 423 aa13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 HOXA1P49639 335 aaPredicted RBP13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 LUMP51884 338 aaPredicted RBP13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF417Q8TAU3 575 aa13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 SYNPRQ8TBG9 265 aa13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 TSEN15Q8WW01 171 aaKnown RBP13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF587Q96SQ5 575 aaPredicted RBP13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 TMEM231Q9H6L2 316 aa13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 ASF1BQ9NVP2 202 aa13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 PCNX1Q96RV3 2341 aa13.02□□□□□ -0.32
SHROOM1-208ENST00000617339 A0A1W2PNR3 127 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 A0A1W2PQM1 296 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2M5A3KFT3 312 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 AKR7A3O95154 331 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 HPP00738 406 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 IGLV3-19P01714 112 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 CD14P08571 375 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 LIPCP11150 499 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 ART1P52961 327 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 ELAVL1Q15717 326 aaKnown RBP13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 STPG1Q5TH74 334 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 FAM220AQ7Z4H9 259 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 GUCD1Q96NT3 240 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF471Q9BX82 626 aaPredicted RBP13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 ZMAT3Q9HA38 289 aaKnown RBP13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF230Q9UIE0 474 aaPredicted RBP13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 NUDT21O43809 227 aaKnown RBP13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 CLPSP04118 112 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 TMIGD3P0DMS9 266 aaPredicted RBP13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 DLX5P56178 289 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 GMFBP60983 142 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF626Q68DY1 528 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 RPL13AP3Q6NVV1 102 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 TMED4Q7Z7H5 227 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 AGBL5Q8NDL9 886 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 FAM71CQ8NEG0 241 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 ADAMTS18Q8TE60 1221 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 DVL3Q92997 716 aaPredicted RBP13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 NAT6Q93015 286 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 PPP4R1LQ9P1A2 415 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 RALGAPA1Q6GYQ0 2036 aa13.02□□□□□ -0.33
SHROOM1-208ENST00000617339 TMED7-TICAM2A0A0A6YYA0 188 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TMEM200CA6NKL6 621 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 PLPP2O43688 288 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 S100A9P06702 114 aaKnown RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 RD3LP0DJH9 198 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 RAB13P51153 203 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 AP3S2P59780 193 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 POLR2GP62487 172 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 DCDP81605 110 aaKnown RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 ACKR1Q16570 336 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 PABPC1L2AQ5JQF8 200 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TMEM164Q5U3C3 297 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 DPY19L2P2Q6ZN68 376 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TMPRSS12Q86WS5 348 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 CPNE2Q96FN4 548 aaPredicted RBP13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 PGLYRP3Q96LB9 341 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TSPAN32Q96QS1 320 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TAS2R5Q9NYW4 299 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 ABRACLQ9P1F3 81 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 TMED7Q9Y3B3 224 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 NPIPB9F8W1W9 429 aa13.01□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2J2O76002 312 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms