RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 FDX2Q6P4F2 183 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 TMEM91Q6ZNR0 172 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 SPATC1Q76KD6 591 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 FAM220AQ7Z4H9 259 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 C9orf106Q8NAJ2 232 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 GHSRQ92847 366 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 WNT2BQ93097 391 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 APH1AQ96BI3 265 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 SLX1AQ9BQ83 275 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 TMED9Q9BVK6 235 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 MROQ9BYG7 248 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 C1orf198Q9H425 327 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 B3GAT2Q9NPZ5 323 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 GLRX2Q9NS18 164 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 TXNL4BQ9NX01 149 aaKnown RBP12.55□□□□□ -0.4
USP39-220ENST00000613444 ATRXP46100 2492 aa12.55□□□□□ -0.4
USP39-220ENST00000613444 TRDV1A0A1B0GX56 115 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 TMEM8BA6NDV4 472 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 OR6C65A6NJZ3 312 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 DVL2O14641 736 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 SC5DO75845 299 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 RPP14O95059 124 aaKnown RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 FGF9P31371 208 aaPredicted RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 FOXG1P55316 489 aaPredicted RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 HIST1H3AP68431 136 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 MRPL28Q13084 256 aaKnown RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 HIST2H3PS2Q5TEC6 136 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 NSUN5P2Q63ZY6 315 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 RTL6Q6ICC9 239 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 DEGS2Q6QHC5 323 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 SEM1Q6ZVN7 128 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 HIST2H3AQ71DI3 136 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 P4HA3Q7Z4N8 544 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 SLAMF6Q96DU3 332 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 SIAEQ9HAT2 523 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 FRRS1LQ9P0K9 344 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 PKD1L2Q7Z442 2459 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 TRBV2A0A0J9YWF9 115 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 CD8B2A6NJW9 211 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 RER1O15258 196 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 PNPP00491 289 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 NPR2P20594 1047 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 GALP22466 123 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 UGT2B10P36537 528 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 GDI2P50395 445 aaKnown RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 RPS11P62280 158 aaKnown RBP eCLIP12.54□□□□□ -0.4
USP39-220ENST00000613444 STK11Q15831 433 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 OR7E24Q6IFN5 339 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 ZNF585AQ6P3V2 769 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 KRT77Q7Z794 578 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 OR2G2Q8NGZ5 317 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 DYNC2LI1Q8TCX1 351 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 HAVCR2Q8TDQ0 301 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 SNRNP40Q96DI7 357 aaKnown RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 FBXO17Q96EF6 278 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 FOXB1Q99853 325 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 PDCD1LG2Q9BQ51 273 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 HDHD5Q9BXW7 423 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 EXOSC4Q9NPD3 245 aaKnown RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 FBXL3Q9UKT7 428 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 SSR3Q9UNL2 185 aa12.54□□□□□ -0.4
USP39-220ENST00000613444 RP1L1Q8IWN7 2480 aaPredicted RBP12.54□□□□□ -0.4
USP39-220ENST00000613444 TPRP12270 2363 aaKnown RBP12.53□□□□□ -0.4
USP39-220ENST00000613444 GABRPO00591 440 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 ZNF254O75437 659 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 ZFPL1O95159 310 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 HLA-DPB1P04440 258 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 B4GALT1P15291 398 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 ALKBH1Q13686 389 aaKnown RBP12.53□□□□□ -0.4
USP39-220ENST00000613444 PRR30Q53SZ7 412 aaPredicted RBP12.53□□□□□ -0.4
USP39-220ENST00000613444 RHOUQ7L0Q8 258 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 GCNT2Q8N0V5 402 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 PRSS35Q8N3Z0 413 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 LRRC18Q8N456 261 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 PRSS50Q9UI38 385 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 POLR1DQ9Y2S0 133 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 FAM215AQ9Y5M1 114 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 SPTA1P02549 2419 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 OR4C45A6NMZ5 311 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 GUCA1AP43080 201 aaPredicted RBP12.53□□□□□ -0.4
USP39-220ENST00000613444 OR3A2P47893 321 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 RIDAP52758 137 aaKnown RBP12.53□□□□□ -0.4
USP39-220ENST00000613444 MFGE8Q08431 387 aaPredicted RBP12.53□□□□□ -0.4
USP39-220ENST00000613444 NRN1LQ496H8 165 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 C22orf42Q6IC83 251 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 ZNF627Q7L945 461 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 SLC22A24Q8N4F4 322 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 OR13C5Q8NGS8 318 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 OR2AJ1Q8NGZ0 328 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 RGP1Q92546 391 aaPredicted RBP12.53□□□□□ -0.4
USP39-220ENST00000613444 COQ7Q99807 217 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 SH3GL3Q99963 347 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 DCSTAMPQ9H295 470 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 C12orf49Q9H741 205 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 MALT1Q9UDY8 824 aa12.53□□□□□ -0.4
USP39-220ENST00000613444 ACACBO00763 2458 aa12.52□□□□□ -0.4
USP39-220ENST00000613444 MBD3L4A6NDZ8 208 aaPredicted RBP12.52□□□□□ -0.4
USP39-220ENST00000613444 MBD3L3A6NE82 208 aaPredicted RBP12.52□□□□□ -0.4
USP39-220ENST00000613444 MBD3L5A6NJ08 208 aaPredicted RBP12.52□□□□□ -0.4
USP39-220ENST00000613444 CST2P09228 141 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms