RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 LRRN1Q6UXK5 716 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 Q6YL49 198 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 SPATC1Q76KD6 591 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 CCDC80Q76M96 950 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 NANOGNBQ7Z5D8 188 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 SYT9Q86SS6 491 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 DPP10Q8N608 796 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 FITM2Q8N6M3 262 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 C11orf65Q8NCR3 313 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 OR2Z1Q8NG97 314 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 OR10S1Q8NGN2 331 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 PFN4Q8NHR9 129 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 NSMAFQ92636 917 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 EBF4Q9BQW3 602 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 TMEM246Q9BRR3 403 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 CCDC28BQ9BUN5 200 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 ALG12Q9BV10 488 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 PARD6BQ9BYG5 372 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 KCNN2Q9H2S1 579 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 TXNIPQ9H3M7 391 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 KAT8Q9H7Z6 458 aaKnown RBP5.1□□□□□ -1.59
VRK3-220ENST00000600259 ELOVL3Q9HB03 270 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 GCM1Q9NP62 436 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 CCNB1IP1Q9NPC3 277 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 MAN2C1Q9NTJ4 1040 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 CCDC167Q9P0B6 97 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 IL20RAQ9UHF4 553 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 SLC13A4Q9UKG4 626 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 PPP1R3CQ9UQK1 317 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 LRCH1Q9Y2L9 728 aa5.1□□□□□ -1.59
VRK3-220ENST00000600259 TANC2Q9HCD6 1990 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 CLPSL1A2RUU4 121 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TNFRSF13BO14836 293 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 TIMM8AO60220 97 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 CLPXO76031 633 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 ZNF205O95201 554 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 KNG1P01042 644 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 UMPSP11172 480 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 MMP9P14780 707 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TNFRSF1AP19438 455 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TNFRSF1BP20333 461 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TUBG1P23258 451 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 PCGF2P35227 344 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 RBM34P42696 430 aaKnown RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 DAP3P51398 398 aaKnown RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 MMP16P51512 607 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 RAG2P55895 527 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 PROK1P58294 105 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 RPL27P61353 136 aaKnown RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 PIN1Q13526 163 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 ZNF181Q2M3W8 571 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 RSPO1Q2MKA7 263 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 AGKQ53H12 422 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 FAM201AQ5SY85 155 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 HIST2H2BDQ6DRA6 164 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 LYPD2Q6UXB3 125 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 UNQ6126/PRO20091Q6UXV3 157 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 BRD3OSQ6XYD6 125 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 ZER1Q7Z7L7 766 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 PATL1Q86TB9 770 aaKnown RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 KLBQ86Z14 1044 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 ALDH16A1Q8IZ83 802 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TMEM86BQ8N661 226 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 OR4F5Q8NH21 305 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 VANGL1Q8TAA9 524 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 ZNF420Q8TAQ5 688 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 LRRC8CQ8TDW0 803 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TMEM255BQ8WV15 326 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 SLC7A6Q92536 515 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 PTP4A1Q93096 173 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TLCD1Q96CP7 247 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 SGTBQ96EQ0 304 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 MEGF10Q96KG7 1140 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 RBP7Q96R05 134 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 OR2V2Q96R30 315 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 CGREF1Q99674 301 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 PKP2Q99959 881 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 RBM4BQ9BQ04 359 aaKnown RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 CDADC1Q9BWV3 514 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 SSBP3Q9BWW4 388 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 CHIAQ9BZP6 476 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 MMP27Q9H306 513 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 CENPHQ9H3R5 247 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 BEX1Q9HBH7 125 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 NOX4Q9NPH5 578 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 POLE4Q9NR33 117 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TUBG2Q9NRH3 451 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.09□□□□□ -1.59
VRK3-220ENST00000600259 RIMS3Q9UJD0 308 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 RAB21Q9UL25 225 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 CORO2BQ9UQ03 480 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 ANGPT4Q9Y264 503 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 HIF3AQ9Y2N7 669 aa5.09□□□□□ -1.59
VRK3-220ENST00000600259 TRAV40A0A0B4J280 105 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 C22orf46C9J442 243 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 MCIDASD6RGH6 385 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 H0YL77 283 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 IFNL4K9M1U5 179 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 MLNRO43193 412 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 FCN3O75636 299 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms