RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CTLA4P16410 223 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 RHCEP18577 417 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 OMPP47874 163 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 LIMS1P48059 325 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 FAM209AQ5JX71 171 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 FAHD2BQ6P2I3 314 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-209ENST00000582653 OR52J3Q8NH60 311 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 FAHD2AQ96GK7 314 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 SAP30LQ9HAJ7 183 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 KLHL21Q9UJP4 597 aa17.39■□□□□ 0.37
SHMT1-209ENST00000582653 PLSCR5A0PG75 271 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 HAX1O00165 279 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 SNX3O60493 162 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 NDUFB2O95178 105 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 PRDX6P30041 224 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 MSX2P35548 267 aaPredicted RBP17.38■□□□□ 0.37
SHMT1-209ENST00000582653 FXYD6P3P58550 94 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 HNRNPA0Q13151 305 aaKnown RBP17.38■□□□□ 0.37
SHMT1-209ENST00000582653 SCGB2A2Q13296 93 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 KRR1Q13601 381 aaKnown RBP17.38■□□□□ 0.37
SHMT1-209ENST00000582653 HFEQ30201 348 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 SPRNQ5BIV9 151 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 SYT9Q86SS6 491 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 RSRC1Q96IZ7 334 aaKnown RBP17.38■□□□□ 0.37
SHMT1-209ENST00000582653 GPA33Q99795 319 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 SYT4Q9H2B2 425 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 POFUT1Q9H488 388 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 ZNF665Q9H7R5 613 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 NRIP3Q9NQ35 241 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 SAMD4AQ9UPU9 718 aaKnown RBP17.38■□□□□ 0.37
SHMT1-209ENST00000582653 COA3Q9Y2R0 106 aaPredicted RBP17.38■□□□□ 0.37
SHMT1-209ENST00000582653 IER3IP1Q9Y5U9 82 aa17.38■□□□□ 0.37
SHMT1-209ENST00000582653 SOCS2O14508 198 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 AHCYL1O43865 530 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 SLC16A7O60669 478 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 ICMTO60725 284 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 VENTXO95231 258 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 PNPP00491 289 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 SDHAP31040 664 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 LIPAP38571 399 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 TEX29Q8N6K0 151 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 ZFAND2BQ8WV99 257 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 SLC7A6Q92536 515 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 CCL17Q92583 94 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 RAB1CQ92928 201 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 ELOVL3Q9HB03 270 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 MSL2Q9HCI7 577 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 G6PC2Q9NQR9 355 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 CYSLTR2Q9NS75 346 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 NDRG4Q9ULP0 352 aaKnown RBP17.37■□□□□ 0.37
SHMT1-209ENST00000582653 AURKCQ9UQB9 309 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 WIPI2Q9Y4P8 454 aa17.37■□□□□ 0.37
SHMT1-209ENST00000582653 UNC119BA6NIH7 251 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 CLDN25C9JDP6 229 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 ATP8B1O43520 1251 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 PLPP2O43688 288 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 DOK2O60496 412 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 DEAF1O75398 565 aaPredicted RBP17.36■□□□□ 0.37
SHMT1-209ENST00000582653 GMNNO75496 209 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 ABHD16AO95870 558 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 GPANK1O95872 356 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 RBMXP38159 391 aaKnown RBP17.36■□□□□ 0.37
SHMT1-209ENST00000582653 HTR5AP47898 357 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 ARHGDIAP52565 204 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 SCRN3Q0VDG4 424 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 DBPQ10586 325 aaPredicted RBP17.36■□□□□ 0.37
SHMT1-209ENST00000582653 PSG7Q13046 419 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 KRT72Q14CN4 511 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 PTCHD4Q6ZW05 846 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 CPLX4Q7Z7G2 160 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 RAB39BQ96DA2 213 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 ELMOD3Q96FG2 381 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 TIMD4Q96H15 378 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 PYURFQ96I23 114 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 FUZQ9BT04 418 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 WACQ9BTA9 647 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 NDEL1Q9GZM8 345 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 NUAK2Q9H093 628 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 GORASP2Q9H8Y8 452 aa17.36■□□□□ 0.37
SHMT1-209ENST00000582653 SGCEO43556 437 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 KHDRBS3O75525 346 aaKnown RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 ADH4P08319 380 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 COX5BP10606 129 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 CDKN2AP42771 156 aaKnown RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 GYS2P54840 703 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 GPR139Q6DWJ6 353 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 SHQ1Q6PI26 577 aaKnown RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 ARL9Q6T311 187 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 C1orf229Q6ZS94 237 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 ZNF771Q7L3S4 317 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 VASH1Q7L8A9 365 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 DHRS1Q96LJ7 313 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 GPX7Q96SL4 187 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 PLEK2Q9NYT0 353 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 VSX1Q9NZR4 365 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 CGGBP1Q9UFW8 167 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-209ENST00000582653 ZDHHC8Q9ULC8 765 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 STARD10Q9Y365 291 aa17.35■□□□□ 0.37
SHMT1-209ENST00000582653 H3BSA7 217 aa17.34■□□□□ 0.37
SHMT1-209ENST00000582653 TIMM8AO60220 97 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms