RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FBXW4P57775 412 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 ACTBP60709 375 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 RAP1BP61224 184 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 RAP1AP62834 184 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 ACTG1P63261 375 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 DCXRQ7Z4W1 244 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 SLC25A45Q8N413 288 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 KCNK17Q96T54 332 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 OR52A1Q9UKL2 312 aa20.39■□□□□ 0.85
VPS53-211ENST00000571805 IGKV1D-43A0A0B4J1Z2 117 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 DCDC2BA2VCK2 349 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 LPLP06858 475 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 ZNF823P16415 610 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 DCAF12L2Q5VW00 463 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 LYPD6Q86Y78 171 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 TMEM229BQ8NBD8 167 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 APCDD1LQ8NCL9 501 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 OR13C3Q8NGS6 347 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 MFSD8Q8NHS3 518 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 ST8SIA1Q92185 356 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 DHRS9Q9BPW9 319 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 ALX4Q9H161 411 aaPredicted RBP20.38■□□□□ 0.85
VPS53-211ENST00000571805 DUSP15Q9H1R2 295 aaPredicted RBP20.38■□□□□ 0.85
VPS53-211ENST00000571805 C1orf198Q9H425 327 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 SUSD2Q9UGT4 822 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 LOC107986453A0A1B0GWG9 222 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 RGS11O94810 467 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 ZNF35P13682 527 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 ACHEP22303 614 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 OR7A5Q15622 319 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 LRFN4Q6PJG9 635 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 ZNF627Q7L945 461 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 LINC00346Q8IVM7 164 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 EXO5Q9H790 373 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 KIF25Q9UIL4 384 aa20.38■□□□□ 0.85
VPS53-211ENST00000571805 MEGF11A6BM72 1044 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 GOSR2O14653 212 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 MBTPS2O43462 519 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 LMX1BO60663 402 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 DNASE1L1P49184 302 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 TAS2R19P59542 299 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 SPOCK1Q08629 439 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 HLXQ14774 488 aaPredicted RBP20.37■□□□□ 0.85
VPS53-211ENST00000571805 C1orf100Q5SVJ3 147 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 H1FNTQ75WM6 255 aaPredicted RBP20.37■□□□□ 0.85
VPS53-211ENST00000571805 KMT5CQ86Y97 462 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 STT3BQ8TCJ2 826 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 WBP1Q96G27 269 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 TGIF2Q9GZN2 237 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 RHBDD3Q9Y3P4 386 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 TNFSF12-TNFSF13A0A0A6YY99 330 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 TEX51A0A1B0GUA7 166 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 LOC390937A0A1W2PQ73 354 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 NPIPA5E9PKD4 350 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 F5H5P2 479 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 AQP8O94778 261 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 GIMD1P0DJR0 217 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 M6PRP20645 277 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 SFRP5Q5T4F7 317 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 ADGRE4PQ86SQ3 457 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 NFAM1Q8NET5 270 aaPredicted RBP20.37■□□□□ 0.85
VPS53-211ENST00000571805 GAL3ST1Q99999 423 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 SCPEP1Q9HB40 452 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 NPIPA1Q9UND3 350 aa20.37■□□□□ 0.85
VPS53-211ENST00000571805 LOC101059948A0A1B0GTJ6 334 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 S100A11P31949 105 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 DAP3P51398 398 aaKnown RBP20.36■□□□□ 0.85
VPS53-211ENST00000571805 C17orf67Q0P5P2 114 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 MPPED2Q15777 294 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 DNM1P34Q6PK57 102 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 CHMP1BQ7LBR1 199 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 CMKLR1Q99788 373 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 NUDT22Q9BRQ3 303 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 ARID1BQ8NFD5 2236 aaPredicted RBP20.36■□□□□ 0.85
VPS53-211ENST00000571805 TMEM269A0A1B0GVZ9 245 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 ARPC5O15511 151 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 RAB3DO95716 219 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 POU3F2P20265 443 aaPredicted RBP20.36■□□□□ 0.85
VPS53-211ENST00000571805 APOBEC1P41238 236 aaKnown RBP20.36■□□□□ 0.85
VPS53-211ENST00000571805 SQSTM1Q13501 440 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 UBXN2BQ14CS0 331 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 MFSD13AQ14CX5 517 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 HYAL4Q2M3T9 481 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 MOGAT2Q3SYC2 334 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 DEGS2Q6QHC5 323 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 WDR74Q6RFH5 385 aaPredicted RBP20.36■□□□□ 0.85
VPS53-211ENST00000571805 ARSKQ6UWY0 536 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 ZNF704Q6ZNC4 412 aaPredicted RBP20.36■□□□□ 0.85
VPS53-211ENST00000571805 TMUB2Q71RG4 321 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 LRRC20Q8TCA0 184 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 PHF7Q9BWX1 381 aaPredicted RBP20.36■□□□□ 0.85
VPS53-211ENST00000571805 POFUT1Q9H488 388 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 MED29Q9NX70 200 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 MED11Q9P086 117 aa20.36■□□□□ 0.85
VPS53-211ENST00000571805 NPIPB13A6NJU9 1138 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 NPIPB4C9JG80 1138 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 C4orf46Q504U0 113 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 OR10K2Q6IF99 312 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 IDO2Q6ZQW0 420 aa20.35■□□□□ 0.85
VPS53-211ENST00000571805 GALNT16Q8N428 558 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms