RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 C11orf40Q8WZ69 217 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 WACQ9BTA9 647 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 PLA2G12AQ9BZM1 189 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 MS4A5Q9H3V2 200 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 REEP1Q9H902 201 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 IL20Q9NYY1 176 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 TAAR3PQ9P1P4 343 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 CDH10Q9Y6N8 788 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 TLN2Q9Y4G6 2542 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 CHD3Q12873 2000 aaKnown RBP12.88□□□□□ -0.35
VPS39-210ENST00000568357 MXRA5Q9NR99 2828 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 IGLV3-9A0A075B6K5 115 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 A0A1W2PPW3 197 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 LOC390937A0A1W2PQ73 354 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 LYNX1G3V0Z9 82 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 BHLHE40O14503 412 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 GSC2O15499 205 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 IDH3BO43837 385 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 DNAJC8O75937 253 aaPredicted RBP12.87□□□□□ -0.35
VPS39-210ENST00000568357 STAMBPO95630 424 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 LYNX1P0DP58 116 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 NOS3P29474 1203 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 CRABP1P29762 137 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 CENPAP49450 140 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 LSM6P62312 80 aaKnown RBP12.87□□□□□ -0.35
VPS39-210ENST00000568357 SCRN3Q0VDG4 424 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 MEP1BQ16820 701 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 ZNF362Q5T0B9 420 aaPredicted RBP12.87□□□□□ -0.35
VPS39-210ENST00000568357 SPATA46Q5T0L3 261 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 RASSF6Q6ZTQ3 369 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 JAZF1Q86VZ6 243 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 NPEPL1Q8NDH3 523 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 OR52E2Q8NGJ4 325 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 OR8D4Q8NGM9 314 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 SNX18Q96RF0 628 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 DDOQ99489 341 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 CADM1Q9BY67 442 aaKnown RBP12.87□□□□□ -0.35
VPS39-210ENST00000568357 RPRD1BQ9NQG5 326 aaKnown RBP12.87□□□□□ -0.35
VPS39-210ENST00000568357 ASH2LQ9UBL3 628 aa12.87□□□□□ -0.35
VPS39-210ENST00000568357 EIF3KQ9UBQ5 218 aaKnown RBP12.87□□□□□ -0.35
VPS39-210ENST00000568357 HIVEP2P31629 2446 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 DHRS12A0PJE2 317 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 RNF212BA8MTL3 300 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 NDUFS8O00217 210 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 SGCEO43556 437 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 ICMTO60725 284 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 RENP00797 406 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 CST1P01037 141 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 TFP02787 698 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 TP53P04637 393 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 ERCC1P07992 297 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 GAAP10253 952 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 USF1P22415 310 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 NR4A2P43354 598 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 KLF3P57682 345 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 AQP6Q13520 282 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 CCDC92Q53HC0 331 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 TMEM255AQ5JRV8 349 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 RFPL4BQ6ZWI9 263 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 VASH1Q7L8A9 365 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 TMEM179BQ7Z7N9 219 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 ZBTB46Q86UZ6 589 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 ZNF786Q8N393 782 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 SDR9C7Q8NEX9 313 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 ABHD4Q8TB40 342 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 SLC25A40Q8TBP6 338 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 UBASH3BQ8TF42 649 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 SLC7A6Q92536 515 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 MARS2Q96GW9 593 aaKnown RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 C4orf45Q96LM5 186 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 DGCR6LQ9BY27 220 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 OR2J1Q9GZK6 312 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 FN3KQ9H479 309 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 MYOZ1Q9NP98 299 aaPredicted RBP12.86□□□□□ -0.35
VPS39-210ENST00000568357 POMPQ9Y244 141 aa12.86□□□□□ -0.35
VPS39-210ENST00000568357 RER1O15258 196 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 DOK2O60496 412 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 IGHV3-13P01766 116 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 HPXP02790 462 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 COX5BP10606 129 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 COL8A2P25067 703 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 MPV17P39210 176 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 ERFP50548 548 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 SELENOVP59797 346 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 HIST1H3AP68431 136 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS39-210ENST00000568357 FLOT2Q14254 428 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 NKPD1Q17RQ9 610 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 TMEM249Q2WGJ8 235 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 ELFN2Q5R3F8 820 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 HIST2H3PS2Q5TEC6 136 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 RPL13AP3Q6NVV1 102 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 DNM1P34Q6PK57 102 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 HIST2H3AQ71DI3 136 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 SPATA24Q86W54 205 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 SLC26A10Q8NG04 563 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 OR10G2Q8NGC3 310 aa12.85□□□□□ -0.35
VPS39-210ENST00000568357 KLF14Q8TD94 323 aaPredicted RBP12.85□□□□□ -0.35
VPS39-210ENST00000568357 ZNRF4Q8WWF5 429 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms