RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 NF1P21359 2839 aa8.44□□□□□ -1.06
CLK3-220ENST00000567992 MED13LQ71F56 2210 aa8.44□□□□□ -1.06
CLK3-220ENST00000567992 CHD3Q12873 2000 aaKnown RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 IQCMA0A1B0GVH7 501 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 OR6C6A6NF89 314 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 B9A039 149 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 H3BN98 237 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 SYNGR3O43761 229 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 DOK2O60496 412 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 FAM157BP0CG42 384 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 FCGR1AP12314 374 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 PCSK6P29122 969 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 PYCR1P32322 319 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 GGT2P36268 569 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 GUCA1AP43080 201 aaPredicted RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 SLC25A1P53007 311 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 ERVS71-1P61550 626 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 SNRPD2P62316 118 aaKnown RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 ELF3P78545 371 aaPredicted RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 CDK5Q00535 292 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 GALK2Q01415 458 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 PLP2Q04941 152 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 SCRN3Q0VDG4 424 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 GINS1Q14691 196 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 SNCBQ16143 134 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 CCDC92Q53HC0 331 aaPredicted RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 TMEM255AQ5JRV8 349 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 LINC01590Q5TEZ4 76 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 SHEQ5VZ18 495 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 LYPD4Q6UWN0 246 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 RFPL4BQ6ZWI9 263 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 AMIGO2Q86SJ2 522 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 LRP11Q86VZ4 500 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 PARP8Q8N3A8 854 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 SVOPLQ8N434 492 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 ATG16L2Q8NAA4 619 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 OR9Q1Q8NGQ5 310 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 MRPL24Q96A35 216 aaKnown RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 DOK1Q99704 481 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 KCNN2Q9H2S1 579 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 CDH20Q9HBT6 801 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 SLC25A19Q9HC21 320 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 PAPOLBQ9NRJ5 636 aaKnown RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 MYEF2Q9P2K5 600 aaKnown RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 KLHL21Q9UJP4 597 aa8.43□□□□□ -1.06
CLK3-220ENST00000567992 ANK3Q12955 4377 aaKnown RBP8.43□□□□□ -1.06
CLK3-220ENST00000567992 NSD1Q96L73 2696 aaPredicted RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 C5orf49A4QMS7 147 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 TRIM64A6NGJ6 449 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 TRIM64BA6NI03 449 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 RER1O15258 196 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SURF4O15260 269 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SGCEO43556 437 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 MITFO75030 526 aaPredicted RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 PTHP01270 115 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 GYPBP06028 91 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 COX5BP10606 129 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 CLUP10909 449 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SPI1P17947 270 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 POU1F1P28069 291 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 APLNRP35414 380 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 PPOXP50336 477 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 GDI2P50395 445 aaKnown RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 UCP2P55851 309 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 PPP2R2BQ00005 443 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 TEKQ02763 1124 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 GLO1Q04760 184 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 RAB35Q15286 201 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 KRTAP27-1Q3LI81 207 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 KDM4DQ6B0I6 523 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SLC18B1Q6NT16 456 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SLC27A4Q6P1M0 643 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 CFAP77Q6ZQR2 320 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 HIPK1Q86Z02 1210 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 PROKR2Q8NFJ6 384 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 OR51L1Q8NGJ5 315 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 OR1J2Q8NGS2 313 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 OR2T4Q8NH00 348 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 DNAJC9Q8WXX5 260 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SLC7A6Q92536 515 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 CENPNQ96H22 339 aaPredicted RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 Q96MF0 132 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SORCS2Q96PQ0 1159 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 PKP2Q99959 881 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 BDH2Q9BUT1 245 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SEMA6AQ9H2E6 1030 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 OR51B6Q9H340 312 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 MED20Q9H944 212 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 ZNF556Q9HAH1 456 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 PNRC2Q9NPJ4 139 aaKnown RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 CYB5R1Q9UHQ9 305 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 TMEFF2Q9UIK5 374 aaPredicted RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 NDRG4Q9ULP0 352 aaKnown RBP8.42□□□□□ -1.06
CLK3-220ENST00000567992 FZR1Q9UM11 496 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 OAZ3Q9UMX2 235 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 SPEF1Q9Y4P9 236 aa8.42□□□□□ -1.06
CLK3-220ENST00000567992 CR1P17927 2039 aa8.41□□□□□ -1.06
CLK3-220ENST00000567992 IGLV3-9A0A075B6K5 115 aa8.41□□□□□ -1.06
CLK3-220ENST00000567992 TVP23AA6NH52 213 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms