RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PSG7Q13046 419 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 ZMAT1Q5H9K5 638 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 MTX3Q5HYI7 312 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 DCAF12L2Q5VW00 463 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 RRM2BQ7LG56 351 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 FAM122BQ7Z309 247 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 HSH2DQ96JZ2 352 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 Q96M85 177 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 GAL3ST1Q99999 423 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 CCDC134Q9H6E4 229 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 NMNAT1Q9HAN9 279 aaPredicted RBP13.61□□□□□ -0.23
CLN3-229ENST00000567963 EMC7Q9NPA0 242 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 TBCCD1Q9NVR7 557 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 WNK2Q9Y3S1 2297 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 ARHGAP32A7KAX9 2087 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 XKRYO14609 159 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 ABHD16AO95870 558 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 TUBG1P23258 451 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 GATA3P23771 443 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 SLC7A2P52569 658 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 HILS1P60008 231 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 CDK5R2Q13319 367 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 MESTQ5EB52 335 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 C8orf82Q6P1X6 216 aaPredicted RBP13.61□□□□□ -0.23
CLN3-229ENST00000567963 C12orf54Q6X4T0 127 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 TSEN54Q7Z6J9 526 aaKnown RBP13.61□□□□□ -0.23
CLN3-229ENST00000567963 ZER1Q7Z7L7 766 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 PEG10Q86TG7 708 aaKnown RBP13.61□□□□□ -0.23
CLN3-229ENST00000567963 ANKRD19PQ9H560 264 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 TUBG2Q9NRH3 451 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 TENM1Q9UKZ4 2725 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 DYSFO75923 2080 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 TEX13CA0A0J9YWL9 993 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 ISPDA4D126 451 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 PRSS37A4D1T9 235 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 SGCEO43556 437 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 TIMM8AO60220 97 aaPredicted RBP13.6□□□□□ -0.23
CLN3-229ENST00000567963 DOK2O60496 412 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 ADRA2CP18825 462 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 GSK3BP49841 420 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 TNFAIP6P98066 277 aaPredicted RBP13.6□□□□□ -0.23
CLN3-229ENST00000567963 SCRN3Q0VDG4 424 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 C1QL2Q7Z5L3 287 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 NPEPL1Q8NDH3 523 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 NANPQ8TBE9 248 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 SLC7A13Q8TCU3 470 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 ZNF570Q96NI8 536 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 POFUT1Q9H488 388 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 EFCAB1Q9HAE3 211 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 NPTNQ9Y639 398 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 ENPP4Q9Y6X5 453 aa13.6□□□□□ -0.23
CLN3-229ENST00000567963 PTP4A3O75365 173 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 CTLA4P16410 223 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 GSTM3P21266 225 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 CFPP27918 469 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 HTR5AP47898 357 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 ZNF771Q7L3S4 317 aaPredicted RBP13.59□□□□□ -0.23
CLN3-229ENST00000567963 VASH1Q7L8A9 365 aaPredicted RBP13.59□□□□□ -0.23
CLN3-229ENST00000567963 CYP4Z1Q86W10 505 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 FAM216AQ8WUB2 273 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 FAM46AQ96IP4 442 aaKnown RBP13.59□□□□□ -0.23
CLN3-229ENST00000567963 SAMD8Q96LT4 415 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 C7orf69Q9H7B7 122 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 MED4Q9NPJ6 270 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 NRIP3Q9NQ35 241 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 PLEK2Q9NYT0 353 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 UBAP1Q9NZ09 502 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 PURGQ9UJV8 347 aaKnown RBP13.59□□□□□ -0.23
CLN3-229ENST00000567963 SIGLEC7Q9Y286 467 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 TMEM5Q9Y2B1 443 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 STARD10Q9Y365 291 aa13.59□□□□□ -0.23
CLN3-229ENST00000567963 A0A1W2PRQ8 180 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 TRIM77I1YAP6 450 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 CCDC22O60826 627 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 NCK1P16333 377 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 KITLGP21583 273 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 SDHAP31040 664 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 LCN2P80188 198 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 HNRNPA0Q13151 305 aaKnown RBP13.58□□□□□ -0.24
CLN3-229ENST00000567963 AQP6Q13520 282 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 DGCR6Q14129 220 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 HACD2Q6Y1H2 254 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 Q6ZR03 302 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 TREML1Q86YW5 311 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 ST7LQ8TDW4 575 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 FAM162AQ96A26 154 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 CMBLQ96DG6 245 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 JMJD8Q96S16 334 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 NDEL1Q9GZM8 345 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 TMEM106BQ9NUM4 274 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 DCAF16Q9NXF7 216 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 OPN4Q9UHM6 478 aa13.58□□□□□ -0.24
CLN3-229ENST00000567963 PPIAL4EA0A075B759 164 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 PPIAL4CA0A0B4J2A2 164 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 PPIAL4DF5H284 164 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 NDUFAB1O14561 156 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 SLC16A7O60669 478 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 NDUFB2O95178 105 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 IGHV2-70P01814 119 aa13.57□□□□□ -0.24
CLN3-229ENST00000567963 H1F0P07305 194 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms