RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 KCNS3Q9BQ31 491 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 OR51V1Q9H2C8 321 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 OR51B6Q9H340 312 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 LAMP3Q9UQV4 416 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 OTOGQ6ZRI0 2925 aa16.89■□□□□ 0.29
CLN3-225ENST00000566824 ARFGEF3Q5TH69 2177 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 IQCMA0A1B0GVH7 501 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 PRR23D1E9PI22 279 aaPredicted RBP16.88■□□□□ 0.29
CLN3-225ENST00000566824 E9PQ18 207 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 PRR23D2P0DMB1 279 aaPredicted RBP16.88■□□□□ 0.29
CLN3-225ENST00000566824 NR4A1P22736 598 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 STOMP27105 288 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 WNT5AP41221 380 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 PLP2Q04941 152 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 KEAP1Q14145 624 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 LPCAT4Q643R3 524 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 SLC18B1Q6NT16 456 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 C20orf204Q6ZNR8 217 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 CFAP77Q6ZQR2 320 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 SYT9Q86SS6 491 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 OR6K6Q8NGW6 343 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 C9orf16Q9BUW7 83 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 GRIP2Q9C0E4 1043 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 NKX1-2Q9UD57 310 aaPredicted RBP16.88■□□□□ 0.29
CLN3-225ENST00000566824 CYB5R1Q9UHQ9 305 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 FBXL3Q9UKT7 428 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 POLR1DQ9Y2S0 133 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 COMMD3-BMI1R4GMX3 469 aa16.88■□□□□ 0.29
CLN3-225ENST00000566824 ARID1AO14497 2285 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 C5orf49A4QMS7 147 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 SGCEO43556 437 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 DOK2O60496 412 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 FAM157BP0CG42 384 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 SLC2A5P22732 501 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 FABP6P51161 128 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 ERVS71-1P61550 626 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 SNTB2Q13425 540 aaKnown RBP16.87■□□□□ 0.29
CLN3-225ENST00000566824 ADIPOQQ15848 244 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 MST1LQ2TV78 715 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 ZBTB49Q6ZSB9 765 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 CXXC5Q7LFL8 322 aaKnown RBP16.87■□□□□ 0.29
CLN3-225ENST00000566824 TCEANCQ8N8B7 351 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 IL17RDQ8NFM7 739 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 OR10H5Q8NGA6 315 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 OR4F15Q8NGB8 312 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 OR10S1Q8NGN2 331 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 UBE2FQ969M7 185 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 ZMYND19Q96E35 227 aaPredicted RBP16.87■□□□□ 0.29
CLN3-225ENST00000566824 PLEKHA8Q96JA3 519 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 CCL19Q99731 98 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 TOR3AQ9H497 397 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 CA10Q9NS85 328 aa16.87■□□□□ 0.29
CLN3-225ENST00000566824 CREBBPQ92793 2442 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 PRRC2AP48634 2157 aaKnown RBP16.86■□□□□ 0.29
CLN3-225ENST00000566824 OR6C6A6NF89 314 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 SYNGR3O43761 229 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 SNAP29O95721 258 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 DBHP09172 617 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 CCNOP22674 350 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 DNASE1P24855 282 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 FMO3P31513 532 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 TTKP33981 857 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 APLNRP35414 380 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 ADAM8P78325 824 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 SCRN3Q0VDG4 424 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 LRRC36Q1X8D7 754 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 TBC1D28Q2M2D7 210 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 RSPO1Q2MKA7 263 aaPredicted RBP16.86■□□□□ 0.29
CLN3-225ENST00000566824 TMEM154Q6P9G4 183 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 ZNF101Q8IZC7 436 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 NUP37Q8NFH4 326 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 TMEM171Q8WVE6 324 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 EME1Q96AY2 570 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 MAP6Q96JE9 813 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 IL4I1Q96RQ9 567 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 TRAF4Q9BUZ4 470 aaPredicted RBP16.86■□□□□ 0.29
CLN3-225ENST00000566824 CDH20Q9HBT6 801 aa16.86■□□□□ 0.29
CLN3-225ENST00000566824 PNRC2Q9NPJ4 139 aaKnown RBP16.86■□□□□ 0.29
CLN3-225ENST00000566824 GDF2Q9UK05 429 aaPredicted RBP16.86■□□□□ 0.29
CLN3-225ENST00000566824 CCDC182A6NF36 153 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 DLGAP1O14490 977 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 TLX2O43763 284 aaPredicted RBP16.85■□□□□ 0.29
CLN3-225ENST00000566824 GLCEO94923 617 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 PAICSP22234 425 aaKnown RBP16.85■□□□□ 0.29
CLN3-225ENST00000566824 PEX2P28328 305 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 HTR5AP47898 357 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 GDI2P50395 445 aaKnown RBP16.85■□□□□ 0.29
CLN3-225ENST00000566824 TRIP10Q15642 601 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 KLHL12Q53G59 568 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 C11orf71Q6IPW1 123 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 DTX2Q86UW9 622 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 WACQ9BTA9 647 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 C1orf198Q9H425 327 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 MARCH7Q9H992 704 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 PLEK2Q9NYT0 353 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 ITGB1BP2Q9UKP3 347 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 FZR1Q9UM11 496 aa16.85■□□□□ 0.29
CLN3-225ENST00000566824 ZNF593O00488 134 aaPredicted RBP16.84■□□□□ 0.29
CLN3-225ENST00000566824 SELENOFO60613 162 aa16.84■□□□□ 0.29
CLN3-225ENST00000566824 NGFP01138 241 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms